Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01027 ATGGAATTTGAACAACACGAAGAAGACGAAgaccaagaagaagaagaagaaatgggATTCCCTGTTACGCCGGTAGCAGGCTACGACTCACTAGGCGGTGGTCGTAAAATGAGCGGTGGCGGTGGAGTTGACGGAGGAGAAACAataacaccaacaacaacagcCACAGGCGGTGGTCGCAAAAACGGGCCCACAGGAACAGTTAGATACAGAGAATGTCAAAAGAATCACGCCGTTAGCATCGGTGGTCACGCCGTTGATGGTTGTTGTGAGTTTTTAGCAGCTGGAGAAGAAGGAACATTAGAAGCCGTAATTTGCGCTGCTTGTAACTGTCACCGGAATTTTCATCGGAAAGAGATCGACGGTGAAATCATTTCTCATAATCAACAACCTCGGTCGTCTCTTCATGCTCAGTATCACCACCAGCATCAGCATCAGCTGCATCAAGTGTCTCCTTACTACCACCGTGCAGCGTTACCTCCTCCGCCGGGGTATCACCACATGGTAACTCCATCGCCGGTGTCGCATCATCGACCGTTAGCTCTTCCACCTGCTGCATCGAGTGGTGGATTCAGTAGAGAAGATGATGACGTGTCAATTCCGAGTAGCAGCGGTGGAGGTGGTGGTAGCGGTGGTGGTGGTAGTGGAATGAAGAAAAGGTTTAGAACAAAATTCACACCGGAACAGAAAGAAAAGATGCTTGCATTTGCGGAACAAATTGGATGGAGAATTCAGAAAGAAGATGAAGGTGCAATTGAACAATTCTGTGCTGAGAATTGTATTAAGAGAAATGTGCTTAAGGTTTGGATGCATAATAACAAGCACATTCGTGGTAAGAAACCCTAA 846 0.4492 MEFEQHEEDEDQEEEEEMGFPVTPVAGYDSLGGGRKMSGGGGVDGGETITPTTTATGGGRKNGPTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEIISHNQQPRSSLHAQYHHQHQHQLHQVSPYYHRAALPPPPGYHHMVTPSPVSHHRPLALPPAASSGGFSREDDDVSIPSSSGGGGGSGGGGSGMKKRFRTKFTPEQKEKMLAFAEQIGWRIQKEDEGAIEQFCAENCIKRNVLKVWMHNNKHIRGKKP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01027 281 SUPERFAMILY Homeodomain-like 204 275 IPR009057 -
Tsu07g01027 281 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 218 274 IPR006455 -
Tsu07g01027 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 60 280 - -
Tsu07g01027 281 MobiDBLite consensus disorder prediction 47 61 - -
Tsu07g01027 281 MobiDBLite consensus disorder prediction 155 220 - -
Tsu07g01027 281 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 70 119 IPR006456 -
Tsu07g01027 281 Gene3D - 202 278 - -
Tsu07g01027 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 60 280 - -
Tsu07g01027 281 Pfam ZF-HD protein dimerisation region 68 120 IPR006456 -
Tsu07g01027 281 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Tsu07g01027 281 MobiDBLite consensus disorder prediction 1 18 - -
Tsu07g01027 281 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01027 Tsu-Chr7 8567646 8568917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01027 10 275 ZF-HD Transcription Factor Family AT4G24660 47.191 4.03e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu07g01027 ZF-HD_dimer 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01027 - - gmx:100820567 325.479