Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01017 ATGCAAGCCCCATGCTACTTTCTTTTGTTCTCATTTGTTCTCttttcatcaacatcaattttaTCCCATGCACTTTCACATGAAGAAGCTTCTTTTATTGCTCGTCGTCAATTGTTACATCTTCAAGAAAACGAGGATTTACCTGAAAACTTCGCAGATACCTATCAAACAAATTTAACTTTTCCTAACGATGGAATCAAACGTGCTTACATAGCACTTCAAGCATGGAAAAACGCAATTTATTCAGACCCATCAAATGTCACGACAAATTGGGTGGGTCCTGATGTATGTTCTTACCAAGGAGTTTTTTGTGCACCTTCTCTTAATGATTCAAAAGTTCAAGTTATAGCTGGGATTGATCTTAATCATGCAGACATTGCAGGTTATATTCCTTCAGAGTTTGGTTTGTTGACCGATCTTGCTCTTTTCCATATAAACACGAATAGATTTTGCGGTATTATCCCAAAAAGCTTCTCCAAATTAAAGCTTTTGTACGAGTTGGATATTAGTAACAACCGATTTGTTGGAAAATTTCCTACACCTGTTCTTTCGATTCCTGATATCAAATACTTGGATATCAGGTTCAATGATTTTGAAGGAGAAATTCCTTCCGAGCTTTTCAATAAACCACTCGACGCTATATTTATGAACAACAACAGATTCACTTCAACAATTCCAGAGAATATGGGAAATTCTCCTGCATCGGTTATTGTTATCGCCAATAACCATCTTAGTGGGTGTATTCCTTCGAGCATTGGTAACATGAAAAAAACATTAAACGAATTTGttttaatcaacaacaatctCACCGGTTGTCTGCCTTCAGAAATTGGAAACCTTGAAGATGCCACTGTTTTTGACGTGAGTGAAAATGTGTTTGTTGGTACGTTACCAAAGACATTGAAGGGACTCAAAAAAGTGGAAGTTTTTTCTATTGCAAATAACAAATTTACAGGTTTTGTTCCAAAAAGTATATGTAGTTTGTCTAATTTGGGGAACTTTACATTCTCAAATAACTATTTCAATGGTGAGGAAGAAGGTTGTGTGCCTCCTGGAAAAGACATTGTGTTGGATGATTGTAATAATTGTATACCTGATAGACCAAACCAAAAGACAGCAAATGATTGCAATGTTGTTATAAGCAAACCTGTTGATTGTAGCAAGACACAATGTACTAGTGGTGGCTCGCCAAGCGATCATAATCAAACACCGACACCTTCTGTTCCAACTCCTTCAAGCGAGAACCCAACACCTTCGGTGCCAAAGCCACAACCACAACCTACCCCATCTCCCTCAAAGCCACAACCCAAACCTACACCTTCACCAAAGCCAAAGCCAACGCCTACACCTTCCAACCCTTCACCAAAGCCAAAGCCAACACCTACACCATCGAACCCTTCACCAAAGCCAACACCAAGTGAGAAGCCACAACCTAAACCAACCCCATCGCCATCCAATCCACCACCAAGTGAGAAACCTACACCAAAGCCACAACCCAAACCAACGCCAACCCCGTCATCACCATCCAATCCACCATCAAGTGATAAGCCGAAACCAAAaccacaaccaccaccaacCCCTTCTACACCTATAGCCGAACCACCAGAAGATGATCCTCACAAAGAATCACCCAAAGATCCCCATAAATCAAAACCTAAGTCACCAGCACCAATTCAATCCCCGCCACCACCAGTTCaatctccaccaccaccaccagttCAGTCTCCACCACCGCCAGTtcaatcaccaccaccaccggtCCACTCTCCACCGCCACCAGTTCATTCACCACCTCCACCGGTACACTCACCACCACCTCCTGTTCATTCACCTCCTCCACCAGTTCACTCCCCACCTCCACCAGTACAATCTCCTCCTCCTCCTGTCCACTCTCCACCACCACCTGTTCATTCTCCACCACCGCCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTATTCTCCTCCTCCGCCAGTTCACTCTCCACCCCCACCCGTTCAGTCGCCACCACCGCCAGTTTTCTCACCGCCACCACCAGTCCACTCTCCACCTCCACCTACTGCATCACCACCTCCTCCTGTTTTCGCACCGCCTCCAGAAGATGA 2187 0.3964 MQAPCYFLLFSFVLFSSTSILSHALSHEEASFIARRQLLHLQENEDLPENFADTYQTNLTFPNDGIKRAYIALQAWKNAIYSDPSNVTTNWVGPDVCSYQGVFCAPSLNDSKVQVIAGIDLNHADIAGYIPSEFGLLTDLALFHINTNRFCGIIPKSFSKLKLLYELDISNNRFVGKFPTPVLSIPDIKYLDIRFNDFEGEIPSELFNKPLDAIFMNNNRFTSTIPENMGNSPASVIVIANNHLSGCIPSSIGNMKKTLNEFVLINNNLTGCLPSEIGNLEDATVFDVSENVFVGTLPKTLKGLKKVEVFSIANNKFTGFVPKSICSLSNLGNFTFSNNYFNGEEEGCVPPGKDIVLDDCNNCIPDRPNQKTANDCNVVISKPVDCSKTQCTSGGSPSDHNQTPTPSVPTPSSENPTPSVPKPQPQPTPSPSKPQPKPTPSPKPKPTPTPSNPSPKPKPTPTPSNPSPKPTPSEKPQPKPTPSPSNPPPSEKPTPKPQPKPTPTPSSPSNPPSSDKPKPKPQPPPTPSTPIAEPPEDDPHKESPKDPHKSKPKSPAPIQSPPPPVQSPPPPPVQSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFSSSASSLSTPTRSVATTASFLTATTSPLSTSTYCITTSSCFRTASRR 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01017 728 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Tsu07g01017 728 MobiDBLite consensus disorder prediction 554 642 - -
Tsu07g01017 728 MobiDBLite consensus disorder prediction 387 647 - -
Tsu07g01017 728 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 2 527 - -
Tsu07g01017 728 SUPERFAMILY L domain-like 70 359 - -
Tsu07g01017 728 Gene3D Ribonuclease Inhibitor 69 351 IPR032675 -
Tsu07g01017 728 MobiDBLite consensus disorder prediction 387 408 - -
Tsu07g01017 728 MobiDBLite consensus disorder prediction 409 533 - -
Tsu07g01017 728 MobiDBLite consensus disorder prediction 534 552 - -
Tsu07g01017 728 PRINTS Proline rich extensin signature 433 445 - -
Tsu07g01017 728 PRINTS Proline rich extensin signature 450 471 - -
Tsu07g01017 728 PRINTS Proline rich extensin signature 411 427 - -
Tsu07g01017 728 PRINTS Proline rich extensin signature 396 408 - -
Tsu07g01017 728 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 2 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01017 Tsu-Chr7 8478072 8480679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01017 5 556 Trihelix Transcription Factor Family AT3G19020 50.000 5.35e-175 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01017 - - gmx:100780677 600.897