LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g00990	ATGGACAACAAATCAACAGTCTCCATTAACTCGACATCATCATTCTGCTTTACCCTTTTCCAGTGTGCTGCCAAGAGTGCCCCAACAAGCATATTATCCAGTCCTGTTACTAGTCCACACAGATTAAGCAGTGTAGATTTATTTGATCCTTCCTTCAATTTTCCTCAAGATTTTAATGACATTTTGAGATTGCCTACTAAAACTGCTCGTAGTCCAGACTTGTCTCCTCGTCTTAGCTTGGGGAACCACAGTCCTATTCACAGCCACACTATGCAAGGGGGATCTCATTCTCACCACTCTAAACATTGCTCCAGAGTGTCTCCTGAAAATAACCATGTCGATGCACATCCATTGCCCCTTCCGCCAAGAGCTTCACCACCGCCACAACAATCACCTCCACAACATCAATCAAATGTCACGTCGCATCACTCAATAGAAAATTTTCATACAATGAAGGGTCAGTGGCAGAAAGGAAAACTTATTGGTCGAGGATCATTTGGAAGTGTTTATCAAGCAATAAACCTAGTGACTGGGGCCTCATGTGCAATGAAAGAGGTGGGTCTGTTTCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAGCTACACCAGGAAATCAGAATTCTCCAGCAACTACACCACCCCAACATTGTTAAATATTATGGCAGTGAAATAGTTGGTGATCAATTCTGCATATATATGGAATATGTCCATCCTGGATCACTAACTGAGTTTATGAAAAAGTATCGTGAGGCTATGACAGAATCTGTGGTTCGCAATTTTACGCGGCATATTCTCTCAGGATTGGCATACTTACATAGTACCAAGACTATCCACAGGGACATTAAAGGTGCAAACTTGCTGGTTGATGCATCAGGCATTGTCAAGCTTGCAGATTTTGGGGTGTCAAAAATTCTGACAGGGAAATCATGTGAACTTTCGCTGAAAGGAAGTCCAAACTGGATGGCACCAGAGCTCATTATGGCTCCCCTGAAGAAAGAAACCGATCCCAATGTCGCCATGGCTGTCGATATATGGAGCTTAGGATGCACCATCATCGAAATGTCGACAGGAAAACCACCTTGGAGCGGGTCAGAGACGCAACAAGCCATGTACAAGGTATTGCAAGGATCCCCGGAGATACCCAAAACTTTATCCCCAGAAGGACAGGATTTCCTTAAGCAGTGTTTCCAAAGGAATCCTGCAGAACGGCCATCTGCGGCGATGCTTCTGACACATGCCTTTGTGCAAAATTTGCATGATCAAGATATTATAGTTCAGTCACAAGTCTCTTTGAGCTTACGGCATTCACATGTTTTTTCTAACGGTATCAGAGCTAAGGAGAATGGAGGACTCTACTACTTTGCAATACAGCCTTTGTATGATCCATCTTGA	1395	0.4351	MDNKSTVSINSTSSFCFTLFQCAAKSAPTSILSSPVTSPHRLSSVDLFDPSFNFPQDFNDILRLPTKTARSPDLSPRLSLGNHSPIHSHTMQGGSHSHHSKHCSRVSPENNHVDAHPLPLPPRASPPPQQSPPQHQSNVTSHHSIENFHTMKGQWQKGKLIGRGSFGSVYQAINLVTGASCAMKEVGLFPDDPKSADCIKQLHQEIRILQQLHHPNIVKYYGSEIVGDQFCIYMEYVHPGSLTEFMKKYREAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDASGIVKLADFGVSKILTGKSCELSLKGSPNWMAPELIMAPLKKETDPNVAMAVDIWSLGCTIIEMSTGKPPWSGSETQQAMYKVLQGSPEIPKTLSPEGQDFLKQCFQRNPAERPSAAMLLTHAFVQNLHDQDIIVQSQVSLSLRHSHVFSNGIRAKENGGLYYFAIQPLYDPS	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g00990	464	MobiDBLite	consensus disorder prediction	119	133	-	-
	Tsu07g00990	464	MobiDBLite	consensus disorder prediction	72	93	-	-
	Tsu07g00990	464	SUPERFAMILY	Protein kinase-like (PK-like)	128	436	IPR011009	-
	Tsu07g00990	464	SMART	serkin_6	155	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu07g00990	464	Gene3D	Transferase(Phosphotransferase) domain 1	145	450	-	-
	Tsu07g00990	464	PRINTS	Tyrosine kinase catalytic domain signature	317	327	IPR001245	GO:0004672\|GO:0006468
	Tsu07g00990	464	PRINTS	Tyrosine kinase catalytic domain signature	385	407	IPR001245	GO:0004672\|GO:0006468
	Tsu07g00990	464	PRINTS	Tyrosine kinase catalytic domain signature	234	247	IPR001245	GO:0004672\|GO:0006468
	Tsu07g00990	464	PRINTS	Tyrosine kinase catalytic domain signature	271	289	IPR001245	GO:0004672\|GO:0006468
	Tsu07g00990	464	ProSiteProfiles	Protein kinase domain profile.	155	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu07g00990	464	MobiDBLite	consensus disorder prediction	69	141	-	-
	Tsu07g00990	464	Pfam	Protein kinase domain	156	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu07g00990	464	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	18	435	-	-
	Tsu07g00990	464	ProSitePatterns	Protein kinases ATP-binding region signature.	161	184	IPR017441	GO:0005524
	Tsu07g00990	464	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA	18	435	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g00990	Tsu-Chr7	8144646	8153429	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g00990	26	418	MAP Kinase Kinase Kinase	AT5G66850	52.791	2.76e-139	414

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Tsu07g00990		Pkinase	2.8e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g00990	-		K04420	gmx:100781764	537.724