Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00965 ATGGTGGCAGCAGCAGCATCATACGAAGAAAGTCGCCGGAAAAGAatggaagaaaacaaaaagagaatGGAAGCTCTCAATCTTCATCAACTTTCTCAATCCCTTAACAAATCATCTTCTCCCAATTCAAAACCATCCCCTTCCAAACCTCGTACCATTCGCAAAGAGCTCGTTGTTGTTCGACGCTCCGGCCGTGTCGCCAACTTGCCTGCTCCCATTTACAAAGAAGTTCTTATTGATCGTGTTATAATACCTAGAAATGGAATTTCaagaGGAGGTTATAATATGTACAGGGATTATTCGAAGCGAGTGTATGCTTCCGATGAAGCTAGAGAAGAAGCATTGGAAAAGGCGGATAAGTTGCAATCCGATTTAGATTCCGATCATCCGACTTTTATTAAGACAATGCTTCAATCTCATGTCACTGGTGGATTCTGGCTGGGCCTTCCGGTTTATTTCTGCAAGCAACACCTTCCAAAACGGGACGAAGCGATGACTTTAATTGATGAGGATGGGGAGGACTATCCAACTACATATTTGGCTCACAAAACAGGACTTAGTGCTGGATGGAGAGGTTTTGCTATTGCTCATAACCTTGTTGACGGGGACgctttaatttttgaattaattagcAGCACTGCATTCAAGGTGTACATTATTAGAGTGAATGGTCCTTCGGAGGGTAAACAGCTCGAGTGA 699 0.412 MVAAAASYEESRRKRMEENKKRMEALNLHQLSQSLNKSSSPNSKPSPSKPRTIRKELVVVRRSGRVANLPAPIYKEVLIDRVIIPRNGISRGGYNMYRDYSKRVYASDEAREEALEKADKLQSDLDSDHPTFIKTMLQSHVTGGFWLGLPVYFCKQHLPKRDEAMTLIDEDGEDYPTTYLAHKTGLSAGWRGFAIAHNLVDGDALIFELISSTAFKVYIIRVNGPSEGKQLE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00965 232 ProSiteProfiles B3 DNA-binding domain profile. 132 223 IPR003340 GO:0003677
Tsu07g00965 232 PANTHER B3 DOMAIN-CONTAINING PROTEIN 1 226 - -
Tsu07g00965 232 MobiDBLite consensus disorder prediction 26 48 - -
Tsu07g00965 232 Pfam B3 DNA binding domain 132 221 IPR003340 GO:0003677
Tsu07g00965 232 MobiDBLite consensus disorder prediction 8 25 - -
Tsu07g00965 232 Gene3D - 106 224 IPR015300 -
Tsu07g00965 232 MobiDBLite consensus disorder prediction 1 53 - -
Tsu07g00965 232 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 226 IPR044837 -
Tsu07g00965 232 SMART B3_2 132 223 IPR003340 GO:0003677
Tsu07g00965 232 SUPERFAMILY DNA-binding pseudobarrel domain 125 223 IPR015300 -
Tsu07g00965 232 CDD B3_DNA 130 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00965 Tsu-Chr7 7950854 7955388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00965 1 223 B3 DNA Binding Superfamily AT3G19184 56.828 4.66e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu07g00965 B3 2.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00965 - - gmx:100797091 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00965 07 7950854 7955388 Tsu07g00965 07 7950854 7955388 ECH