Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00946 ATGGACTCTAACCAGTTAAAACCATCCTCCTCATCATCAGAAGATCAGATTGacatgatgttgatgatgatgatgcaaCTCCCTGAACTTTCTTCATCTAACGGTAACAACACCATCAATGAATTTCCACCGTCAGATCAACAACTCTATGGTTCTACTTCTACTAATACACGTCCTCTTGCAGATTTAATTGATAACCCTCCTAATCAAATCCATAATTGGTCTTCAACTTCATCATTCACCACTCACTTACCCTCACAATCCACGGACACAAACACAGACACAAACACAATCTCTTTTACTAATAACAACATGTTTCAACAACTACAACAAACACAACCAACGTTAATGTTTTCGAATTCGAACAACGATGTTGTTACAAATACGAACCATTATGTTGATGGTGCAGTGTCGCCATCAGAGAAACGAAACTCGATGGCGGCGATGAGGGAAATGATATTCAGAATAGCAGCTATGCAACCAATTTACATTGATCCAGAATCTGTAAAACCACCAAAGAGAAGAAACGTGAAGATTTCAAAAGATCCACAGAGTATAGCAGCAAGAcatagaagagaaagaataagTGAGAAAATAAGAATATTGCAGAGAATGGTACCAGGTGGGACTAAAATGGATACTGCATCAATGTTAGATGAAGCTGTTCATTATGTTAAGTTTCTGAAAACGCAACTTAAGTCGCTTCAAGAACGTGCTTCTGTAACAAACAGTAACAGGACAGTTGCAGGTTCAGGAATAGGGTTCCCTGTTTCATTGCCTAAGCCTTATCATCAAGGTCGTAATGTTGATCATTATGCATGA 822 0.3662 MDSNQLKPSSSSSEDQIDMMLMMMMQLPELSSSNGNNTINEFPPSDQQLYGSTSTNTRPLADLIDNPPNQIHNWSSTSSFTTHLPSQSTDTNTDTNTISFTNNNMFQQLQQTQPTLMFSNSNNDVVTNTNHYVDGAVSPSEKRNSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAVHYVKFLKTQLKSLQERASVTNSNRTVAGSGIGFPVSLPKPYHQGRNVDHYA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00946 273 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 248 - -
Tsu07g00946 273 Pfam Helix-loop-helix DNA-binding domain 186 228 IPR011598 GO:0046983
Tsu07g00946 273 Gene3D - 178 248 IPR036638 GO:0046983
Tsu07g00946 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 241 IPR036638 GO:0046983
Tsu07g00946 273 SMART finulus 185 234 IPR011598 GO:0046983
Tsu07g00946 273 CDD bHLH_AtIND_like 180 242 - -
Tsu07g00946 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Tsu07g00946 273 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 248 IPR045843 GO:0003700|GO:0006355
Tsu07g00946 273 Coils Coil 218 245 - -
Tsu07g00946 273 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00946 Tsu-Chr7 7800117 7800938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00946 136 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 71.654 2.59e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g00946 HLH 9.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00946 - - gmx:100815041 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00946 07 7800117 7800938 Tsu07g00946 07 7800117 7800938 ECH