Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00911 ATGGGAAGAGTGAAGCTCCAGATCAAGAAAATTGAGAACACAACGAATAGACAAGTCACTTTCTCGAAGAGGAGAAATGGTTTAATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTTGCTCTCATAATGTTTTCTCCATCTGGGAGAGCCACTCTCTTCTCTGGCAATCGAAGGTGCCACATTCGAAAGCTTCTCCGTAAGTTGAAAGTTGAAACCGATCAAATTTGTCAAGAAgaggttcaaAGAGAAATTTTTATTTGCAAGAATCAATTGGAAGAGATGAAGAATCGACTAAGGATATTTGAAGGAGATCCTTCTGAGATCACCACATTGTATGAAGCTGAATACCATGAACAAGTACTTCAGGAAACTCTAAAACGAGTGCAACTGCGAAAAGTAAGTTTTATAGTACATCTTACAAAAACTGTAGATGTAGATGGCTTTGTTGCTGGAACTACAGAGAATGCATTAGCCTGGTTTCCGCAAGGAGATACCAACGATCAGATTCTGAACTTTGTTAATGCTTATGGCCCTTCTCCTCTCAGTGATCACCAATCAATGAGTACCATTGTTAATATGACAACGCCAACTTCAACCCTTCTGCATTCTGCAAACATCAATCGCGATTGTCAAATTAGTCCCGGGGATGGTACAGACACTAACATTAATAATACACCTCAGTTTGGACAAGTTACAGATAACAATTTGTCCTCTTGGGAGCACCTCCACCATTTAGAGAATGGTGCATTATCAGTTGCAGAGACAAGAGAAGGACAACTACTGCAACAATATCTTTCTCAAGTTGCTCTGACAAATGTTTTAATGAGTAATCAAGATCATCTTCAAACATGA 864 0.3854 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATLFSGNRRCHIRKLLRKLKVETDQICQEEVQREIFICKNQLEEMKNRLRIFEGDPSEITTLYEAEYHEQVLQETLKRVQLRKVSFIVHLTKTVDVDGFVAGTTENALAWFPQGDTNDQILNFVNAYGPSPLSDHQSMSTIVNMTTPTSTLLHSANINRDCQISPGDGTDTNINNTPQFGQVTDNNLSSWEHLHHLENGALSVAETREGQLLQQYLSQVALTNVLMSNQDHLQT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00911 287 Coils Coil 81 101 - -
Tsu07g00911 287 CDD MADS_MEF2_like 2 53 IPR033896 GO:0000977|GO:0045944
Tsu07g00911 287 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Tsu07g00911 287 PANTHER MADS BOX PROTEIN 1 62 - -
Tsu07g00911 287 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 62 - -
Tsu07g00911 287 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 77 245 - -
Tsu07g00911 287 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu07g00911 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Tsu07g00911 287 SUPERFAMILY SRF-like 2 68 IPR036879 GO:0003677|GO:0046983
Tsu07g00911 287 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu07g00911 287 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu07g00911 287 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu07g00911 287 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu07g00911 287 PANTHER MADS BOX PROTEIN 77 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00911 Tsu-Chr7 7435084 7437354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00911 1 170 Type I MADS-box Gene Family AT1G22130 41.256 2.49e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu07g00911 SRF-TF 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00911 - - mtr:MTR_3g102570 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00911 07 7435084 7437354 Tsu07g00911 07 7435084 7437354 ECH