Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00883 ATGATTCTTGATATGGATCGTTCGCTACAACCTGATATTGATATCAAACCCGAGCATTGTCCAGAAGCTGTGATTGAATGGTACCACTTAACAGGACTAAAAGACCGTAAAGCAAGTGCAAATAGAAGGGATTTGGCTTTGAAAGCAAAACAACATCTTCTTTTCTTGGGATGGAAGTTTTGGTATATTGACAAAAAATGTAGGTGGGAACTTCGTTATACTTCTACCAATGGCAAAACCTTTCCCACTCTTAAATTGGCTTGTCAGAGTTGTATTGAAAGTGGAGGCTGTTCCCTCAAACAATCTTCAACTGCAGCAGCACCGGCAGCAATTTCTTCATCTCAATTACAGTCGAAAAAGAGGCCGAGAGAATCTGAAGTAACCGGTGAAAAAAGAGACCGCAAACATCCTTCATTTGTAGCAGCACCACCAGCTGTAACATCAATCTTTTCGTCTCCATTGCAGTCGGTGAATCAACCGAGAGAATACAAAGAAGCcattgaagaagatgatttgCTTTCCTTCAAACACCCTTTATTCAAAGCACAACCAACAGCAGAAACATCAATCTTTTTGTCTCCAATGCAGTCGATGAATCAACCAAGAGAATACCAAGAAACCAATGAAAAAGATGGAGTTTTTTCCCTCCAACATCCTTCACTCGGAGCACCACAAGCAGCAGAAACATCGGACTTTTCGTTTCCATTTCAGTCGTTGTTGCAACCGGAAGAATACGAAGAAATCAATCAAGAAAATGGAGATTTTTCCCTCAAAAACCCTTCCACTGCAGCACCACCAGCGGCAGCAACATCAATCCCTTGGTCTCCATTACAGTCGAAAGAGCAACCAATAGAATCAGAAGTAACCGATGAAAAAGGAGGATGTTCCCTCAATCAAGCTTCAACTGCAATACCAGCAGCAGCACTAACAACAACATTGATCTCTTCGCCTCCATTACAGTCGAAAGAGCAACTGAGAGAATCCAAAGAAACCGATGAATCAACTTCCGATGAGGATTCTAGCGATGATTCAAGTTCCGATGATTCAAGTTCCGATTCGGATTCTGACGATGATTCAACTTCAGATGAAGATTCTGAACCTTCCAATTCTAGTTTTGGTAAAAAAGCTCCGGTGACTATGGTCTCGACATCAAAGGAAAATGAGAAACATGAGAGTCAATCTGAATCCGAAGTTACTAATTCGGTGGGAAGTGGTGAAAGAGGAAAGGTATTAAAGTTGAGTATAATGGAGAAGAATTCAGAGACTTGTAATAATAAAGGGAAAGTATTAAAGACGGGTATAAAGAATTCAGAGGGTTGCCGTAAAAGAGGGATGGTATTAAAGAGGGAAGGTGTAAGGGAAAGGTATTCACTTGTTTCTTGGTTGATAAAGAATCAAGTTTTGGTTCCAGGGACTGATGTGTTTTGTCGCGGTAGTAacaatgttgtcaaaagagGGAGTTTATTTGCTGATGGTATAGTTTGTGATTGTTGTCATGTTAATTTCACTGTCACTGGATTTGAGGCTCATGCTGCTTGTACAAGACATCGACCATCCACTAGTATCTTGTTGGAAGACGGAAGGTCGTTGTTGCAATGTCAAAGGGAAGCTCAGAGTTTGCGTGATCAACCCGGGAATCATTGTGTAGCCGAAGCAAATTCTGAAGCAAATAATGATAATGTTTGTGGTATTTGTGGTTTTGGAGGCGACATAGTACTATGCGATCGATGTCCTTCTTCATTCCATCTCAGTTGTTTAGGTCTCGATCAAGTTCCAGATGGTGACTGGTTCTGTCCAACTTGTTGCTGCAAAATATGCTATGGACCCAAATGCAAACAAGAATGTGCAGATCAAAATGATAACAGTATTCTTGCTTGTGTTCAATGTGAGCAAAAATATCACTTTGGGTGCGTAAAGGCTTCAGGATTTGGACCTAGTAAAACGGAGAGCAATCCGAAAAAGAAGAATTGGTTTTGCAGTGTAGTTTGTGGGAACATGTTCCTATGTCTAAAGAAGCTGTTAGGGAAACCAATTACGATGGCAGATAATATAACCTGGACATTGTTGAAGAATAACGCGAGTAGTGATTACGATTATGATGGTGGAAATTTTACGTCTTTTGACTTCAGTCTAAATAAGAGAAAGTTGAATGCAGCTCTTGGTTTATTGTATGAGAGTTTTAACCCAAGCATTGATGCTTTCTCTGGAAGAGAGTTGATTAAAGATGTTGTATTTAGCAGAGACTCAAAACACAATCGCTTGAACTTTCGTGGTTTCTATAACGTGATTTTAGAGAAAATGGGTGTAGTGGCTTCAGTGGCAACTATAAGGATTTACGGTCCAAAGGTTGCTGAGATAGTTTTCGTAGCTACCAAGGAACAGTATCGAAGACAAGGATTGTGTCGTTTGTTGATGGATGAGCTTGAGAAACAGTTGATTCGCTTAGGAGTTCAGAGCTTTGTTTTGcattcatctgagtatgctatAAACACTTGGACAAAATCATTTGGCTTTCGTAGGATGACTGGTAACGACAAGAATCAATTTATTGACAATACTTTCTTGGAATTTCAGAACAGTATCATGTGCCTTAAAACACTGAATAGACCTACATGGCCTTACATTGCTCGATGA 2634 0.3937 MILDMDRSLQPDIDIKPEHCPEAVIEWYHLTGLKDRKASANRRDLALKAKQHLLFLGWKFWYIDKKCRWELRYTSTNGKTFPTLKLACQSCIESGGCSLKQSSTAAAPAAISSSQLQSKKRPRESEVTGEKRDRKHPSFVAAPPAVTSIFSSPLQSVNQPREYKEAIEEDDLLSFKHPLFKAQPTAETSIFLSPMQSMNQPREYQETNEKDGVFSLQHPSLGAPQAAETSDFSFPFQSLLQPEEYEEINQENGDFSLKNPSTAAPPAAATSIPWSPLQSKEQPIESEVTDEKGGCSLNQASTAIPAAALTTTLISSPPLQSKEQLRESKETDESTSDEDSSDDSSSDDSSSDSDSDDDSTSDEDSEPSNSSFGKKAPVTMVSTSKENEKHESQSESEVTNSVGSGERGKVLKLSIMEKNSETCNNKGKVLKTGIKNSEGCRKRGMVLKREGVRERYSLVSWLIKNQVLVPGTDVFCRGSNNVVKRGSLFADGIVCDCCHVNFTVTGFEAHAACTRHRPSTSILLEDGRSLLQCQREAQSLRDQPGNHCVAEANSEANNDNVCGICGFGGDIVLCDRCPSSFHLSCLGLDQVPDGDWFCPTCCCKICYGPKCKQECADQNDNSILACVQCEQKYHFGCVKASGFGPSKTESNPKKKNWFCSVVCGNMFLCLKKLLGKPITMADNITWTLLKNNASSDYDYDGGNFTSFDFSLNKRKLNAALGLLYESFNPSIDAFSGRELIKDVVFSRDSKHNRLNFRGFYNVILEKMGVVASVATIRIYGPKVAEIVFVATKEQYRRQGLCRLLMDELEKQLIRLGVQSFVLHSSEYAINTWTKSFGFRRMTGNDKNQFIDNTFLEFQNSIMCLKTLNRPTWPYIAR 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00883 877 MobiDBLite consensus disorder prediction 365 383 - -
Tsu07g00883 877 Gene3D - 724 854 - -
Tsu07g00883 877 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 722 870 IPR000182 GO:0016407
Tsu07g00883 877 ProSiteProfiles Zinc finger PHD-type profile. 559 604 IPR019787 -
Tsu07g00883 877 MobiDBLite consensus disorder prediction 247 296 - -
Tsu07g00883 877 SUPERFAMILY FYVE/PHD zinc finger 552 612 IPR011011 -
Tsu07g00883 877 Pfam Tify domain binding domain 486 537 IPR032308 -
Tsu07g00883 877 MobiDBLite consensus disorder prediction 314 404 - -
Tsu07g00883 877 Pfam Acetyltransferase (GNAT) family 760 838 IPR000182 GO:0016407
Tsu07g00883 877 Pfam PHD-finger 562 603 IPR019787 -
Tsu07g00883 877 MobiDBLite consensus disorder prediction 119 138 - -
Tsu07g00883 877 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 716 843 IPR016181 -
Tsu07g00883 877 MobiDBLite consensus disorder prediction 334 364 - -
Tsu07g00883 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 621 IPR013083 -
Tsu07g00883 877 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 11 870 - -
Tsu07g00883 877 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 11 870 - -
Tsu07g00883 877 SMART PHD_3 610 663 IPR001965 -
Tsu07g00883 877 SMART PHD_3 561 602 IPR001965 -
Tsu07g00883 877 MobiDBLite consensus disorder prediction 108 138 - -
Tsu07g00883 877 CDD NAT_SF 762 823 - -
Tsu07g00883 877 MobiDBLite consensus disorder prediction 252 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00883 Tsu-Chr7 7218761 7221394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00883 404 810 PHD Transcription Factor Family AT5G58610 38.647 8.56e-81 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu07g00883 Acetyltransf_1 1.8e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00883 - - mtr:MTR_3g103110 913.294