Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00848 ATGTACAGTACCATGAATTTCAACATAGATTCTGACAAATCCAAGCTCTTTGTTGGTGGCATTTCTCGCGAAACAACCGAAGATAATCTCAAACAACATTTCTCCAAGTATGGCGAGGTTTTGGTTTGCACCATCTCTTTCGACCGCACCACCCACATCCCTAGAGGTTTTGGCTTTGTTACTTTCTCCGATATATCTTCAGCTCACAATGCACTTCAAGACACCCATGTTATTCTTGGACGAAAGGTAGAAGTTAGAAAAGCAATACCCAGAAGAAATGAACAGcacaaacaaaatcaattacaGAATAGAGGGGGAAATAGCTATAGTAATTATGAATGTAACAGTGATTACATTAGGACTAAAAAGATTTTTGTGGGAGGTTTACCTGCTAATATGTCTGTGGAGGAGTTTAAGAGATACTTTGAGAAGTTTGGTACAATAACTGATGTGGTGGTGATGCAGGATAGTGTAACTCATAGGCCGAGAGGGTTTGGGTTTATCACTTTTGATTCTGAAGATTCTGTGCAAAATGTTATGATGAAAAATTTTCACGACTTGAATGGTAGACAGGTGGAGGTTAAGAGAGCTGTTCCGAGGGAAGGGAAGTTTGGTTATGATGGTTTTAGTAATAAGATGAGATATCAGAGTGATAGAGGAGCTGCTGAAACAACTCTGGTTCCTTCTAGTCCCGCGAACACGCATCCTGGATTTGCTCCTTTACCTTTGTATACTGGTGGTGATGGAGTATATGGATACGGATCAAATCCCTATGGTTGCTGGTACCCTGTGGGTGGGTATGGAGGGAATGGATTTGCAGCTCCATCAGATGCTTATAGGAACTTCTGGTATGGGCAAATGGTAACTGGTCCTCAGGCTTGTCAGATGCCTTATGCTAATGTTATGCCCAATGTTCCATATATGGGTGGCAGGGTTGAAATTGTAGGTAGTGATGCCGGAACATGGGGATACAATGCCTTTCTTGGTTCcacaacaaattataaatttgaccAACCTTTTATTACTAATGGATTTGTTCAAGTCAATGTACCATCACCTCATGGTGTAAAGCAGATTGTTGGTGCTTCAAGTTTTAACGGAAGCAATGGGGAAATTTCTAGTTGA 1125 0.3991 MYSTMNFNIDSDKSKLFVGGISRETTEDNLKQHFSKYGEVLVCTISFDRTTHIPRGFGFVTFSDISSAHNALQDTHVILGRKVEVRKAIPRRNEQHKQNQLQNRGGNSYSNYECNSDYIRTKKIFVGGLPANMSVEEFKRYFEKFGTITDVVVMQDSVTHRPRGFGFITFDSEDSVQNVMMKNFHDLNGRQVEVKRAVPREGKFGYDGFSNKMRYQSDRGAAETTLVPSSPANTHPGFAPLPLYTGGDGVYGYGSNPYGCWYPVGGYGGNGFAAPSDAYRNFWYGQMVTGPQACQMPYANVMPNVPYMGGRVEIVGSDAGTWGYNAFLGSTTNYKFDQPFITNGFVQVNVPSPHGVKQIVGASSFNGSNGEISS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00848 374 Gene3D - 6 120 IPR012677 -
Tsu07g00848 374 SMART rrm1_1 123 195 IPR000504 GO:0003723
Tsu07g00848 374 SMART rrm1_1 15 86 IPR000504 GO:0003723
Tsu07g00848 374 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 363 - -
Tsu07g00848 374 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 10 363 - -
Tsu07g00848 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723
Tsu07g00848 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 90 IPR000504 GO:0003723
Tsu07g00848 374 SUPERFAMILY RNA-binding domain, RBD 118 216 IPR035979 GO:0003676
Tsu07g00848 374 SUPERFAMILY RNA-binding domain, RBD 10 112 IPR035979 GO:0003676
Tsu07g00848 374 Gene3D - 121 201 IPR012677 -
Tsu07g00848 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Tsu07g00848 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00848 Tsu-Chr7 6980276 6982007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00848 14 268 Eukaryotic Initiation Factors Gene Family AT4G34110 25.379 1.20e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00848 K14411 - gmx:100816822 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00848 07 6980276 6982007 Tsu07g00848 07 6980276 6982007 ECH