Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00838 ATGAACACCATGAGCAATTTTCATCATATATCTCTTGGTCTTACATTAGGAGTAGGATCCcttgaaaatattaatattgattatGAGAGAAATAATCAAGTAGCTACTACAAAGATTGAACCGGATGATGagtatatttataatttgtatCAACGTGCCTCTAATTCTACTAGCATGCAAGTGTCTTCATTTTCCAACTCTTGTAATAGCATCAAGAGGGAGAGAGATCATGAGCCTCATgatattgatgttgatgaaaatggtaactCCAATAGGAAGAAACTTAGACTCACCAAAGAACAATCAGCAGTATTGGAGGACACTTTCAAAGACCATTCTACCCTCAATACGAAGCAAAAGCAAGAATTGGCAACCAAGCTTAATCTTCGTACGAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGGGCAAGGACAAAGTTAAAACAAACGGAGATGGATTGCGAAGAACTGAAGAAGTGTTACGAAACTCTAACAGAAGAGAACAAGATGCTGGAAGAGGAATTGAGAGAGCTGAAGTCAATGAAAACAACGGCggaacaatttaattataagcCACTTCAAGTAGCCGGTCTTACAGTTTGCCCTTCCTGTAAGAAAATTTGCCCCGGTCGCCGTGGTGACAATGGCCCGTCTCACACCACGGCTTTGCTTCTTAGCCCAAAGGCCCAAATTCACTTCTATACAAATAGTAAATACACATTCACCCAATCTTCTGCAACTATTGCTAGCTAG 753 0.3745 MNTMSNFHHISLGLTLGVGSLENINIDYERNNQVATTKIEPDDEYIYNLYQRASNSTSMQVSSFSNSCNSIKRERDHEPHDIDVDENGNSNRKKLRLTKEQSAVLEDTFKDHSTLNTKQKQELATKLNLRTRQVEVWFQNRRARTKLKQTEMDCEELKKCYETLTEENKMLEEELRELKSMKTTAEQFNYKPLQVAGLTVCPSCKKICPGRRGDNGPSHTTALLLSPKAQIHFYTNSKYTFTQSSATIAS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00838 250 MobiDBLite consensus disorder prediction 60 93 - -
Tsu07g00838 250 SMART HOX_1 90 152 IPR001356 GO:0003677
Tsu07g00838 250 Coils Coil 140 188 - -
Tsu07g00838 250 MobiDBLite consensus disorder prediction 70 93 - -
Tsu07g00838 250 Gene3D - 96 146 - -
Tsu07g00838 250 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Tsu07g00838 250 PANTHER - 13 250 - -
Tsu07g00838 250 CDD homeodomain 92 149 IPR001356 GO:0003677
Tsu07g00838 250 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Tsu07g00838 250 Pfam Homeobox associated leucine zipper 148 182 IPR003106 GO:0006355|GO:0043565
Tsu07g00838 250 SMART halz 148 191 IPR003106 GO:0006355|GO:0043565
Tsu07g00838 250 SUPERFAMILY Homeodomain-like 80 149 IPR009057 -
Tsu07g00838 250 Pfam Homeodomain 92 146 IPR001356 GO:0003677
Tsu07g00838 250 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 13 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00838 Tsu-Chr7 6859435 6861298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00838 75 207 Homeobox Transcription Factor Family AT4G37790 63.910 3.33e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu07g00838 Homeodomain 6.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00838 K09338 - gmx:100790927 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00838 07 6859435 6861298 Tsu07g00838 07 6859435 6861298 ECH