Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00835 ATGATCAAAATTCCAAACCTTAAAATCCCCGAATGGGACACAACACAATACGAGGAAAACACAAACATTTTCACTACAGAAGATTTTGATTTACCAATCCATGTTTTCTCCACAGACCAATTTCGAATGTTTGAATTTAAAGTGAGAAAATGCCAACGGGGCAGATCACATGACTGGACAGAATGTCCATACTCACATCCCGGCGAGAAAGCTCGCCGGAGAGACCCACAAAAATACAATTACTCCGGCAATCCATGCCCGGAGTTTCGCAAATTAGGAAACTGCACCAAAGGTGATTCATGTTACTTTGCTCATGGTGTTTTTGAGTGTTGGCTTCACCCTTCTCGTTACAGAACTCAGCTTTGTAACGACAGTACCGCTTGTCGCCGGCGAGTTTGTTTCTTTGCTCATACCATTAATCAACTTCGTATCTCAACTAAATCTTCACCAGAATCCTTTGTTTCATCTCCTACTTCGGTTCTTGATTCTCCTCCGGGGAAATCTTCCCGGTACGGTGTTGTTCCGGTGAACATGCAGGAATTAGTTGGCTTCATGAATAATGTTCGGGTTGATGATAATTCGGGTCGGGTTTCTCAGATGGGTTGTGTGTTTGGGTCTCCGCGTGGTGGTTTTTTGAGTCTTCCATCAAACTCTGAAGGGGTTGTTATGGAGAGGGTTGAACCAGGAAGAGATCTTAGAGCAAAAATCTATGCAAAATTCAGTAGAATGAATTTCAATGATGGTGGTGCTGTTTCGGTCCCTGTTCCTGATATTGGATGGGTTTCAGAACTGGTTAACTGA 801 0.432 MIKIPNLKIPEWDTTQYEENTNIFTTEDFDLPIHVFSTDQFRMFEFKVRKCQRGRSHDWTECPYSHPGEKARRRDPQKYNYSGNPCPEFRKLGNCTKGDSCYFAHGVFECWLHPSRYRTQLCNDSTACRRRVCFFAHTINQLRISTKSSPESFVSSPTSVLDSPPGKSSRYGVVPVNMQELVGFMNNVRVDDNSGRVSQMGCVFGSPRGGFLSLPSNSEGVVMERVEPGRDLRAKIYAKFSRMNFNDGGAVSVPVPDIGWVSELVN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00835 266 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 19 266 - -
Tsu07g00835 266 PANTHER UNKEMPT FAMILY MEMBER 19 266 IPR045234 -
Tsu07g00835 266 SUPERFAMILY CCCH zinc finger 79 110 IPR036855 GO:0046872
Tsu07g00835 266 SMART c3hfinal6 116 139 IPR000571 GO:0046872
Tsu07g00835 266 SMART c3hfinal6 80 107 IPR000571 GO:0046872
Tsu07g00835 266 Gene3D - 76 151 - -
Tsu07g00835 266 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 106 IPR000571 GO:0046872
Tsu07g00835 266 ProSiteProfiles Zinc finger C3H1-type profile. 80 108 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00835 Tsu-Chr7 6830331 6831587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00835 30 143 C2H2 Transcription Factor Family AT5G12850 62.281 5.62e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu07g00835 zf-CCCH 8.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00835 - K23048 mtr:MTR_3g103960 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00835 07 6830331 6831587 Tsu07g00835 07 6830331 6831587 ECH