Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00829 ATGGACAAAGATATGTTACATTGGTTGGAACaacaaatggaagaagagcaacaCACAACCAATGCAACATGGGCCAATACAACTAGTGCCAACAACAATGGTTTGGAAGTTGGTTGGTACATGAACAATATACCACCTCATAGTGAAGAATTGATCCCAAATCTTCAAGTTCACACCCAACAACAAAACAATGTTTGTCCATTAGATCCAAACACTTTTGGTCTTATGCAACCTTTGGGTTCATTCTCTTTGTTATCACCACCTAAATCCAACTTCGCCCATTTACTTAATACCAACTACAATATcgacaccaccaccaccaccgtcGTCAACAACAATGACGATAACAATCCATTTGGTAGTGTTTTCAATTTGGAATCCCAAAAGGGAAATGAGGAGGTTGAGGGAGGATTGAATGATGACTCTAATGAGGTGGTCAACATTACGAATATGGAGAATGATGGTGGAAATAATTATAATGTTGATAACAATGTTGgtgacaacaataataataacattgtgtgtaataatgatgatggtgatgatgaaaaTCGTCATCATGCTGACGGGGGGCGAAAAGGGAAGAAGAATGAAAGGACAACAAAAAGTCTCATAGCTGAGAGACGGCGAAGGAAGAAACTTAGTGATAGAATGCACAAGCTTCGTTCTATTGTGCCAAATATAAGCAAGatgGACAAAGCTTCAATACTTGGAGATGCTGCTGACTACTTGAAAGagttacaacaaaaaattaataatcttCAAATTGAATTAGAGTCAAGCTCTCCTGGATTGTTCACTGTGGCACCCCCCACACCAACTCTACTTGTTCCAGTTAAAGAGGAATTGTGTCATAGCAATATGTCAAGCCCTAAAAACCAATCAACAAAGGTAGAGGTTAAAGAAAGGGAAGGAGGAACTGTCGATATCCATGTGTCTTGCACCCACAAATCAGATATTTTGCTTTCAACTATGAAGGCATTGGATAGCCTTGGATTGGATGTACATCAAGCTGTCATAAATTGTTTCAATGGTTTTTCTATAGATGTGTTCAAAGCTAagCAATACAAAGAAGGCCAGAAAGTGCTTCCTGAGCAAATTAAAGCAGTATTGTTGAATACATTGAGTTTCCATGGCATGCTtctaaataataatatgatatctGGTCTTGATGGGTCTGAGCTGATCTTGAAGTTATCCAATCCATCTTATTATGTATTGGCCATTGCTGGAGCTACATCATCAGTTTCCATTGCaaattga 1263 0.3444 MDKDMLHWLEQQMEEEQHTTNATWANTTSANNNGLEVGWYMNNIPPHSEELIPNLQVHTQQQNNVCPLDPNTFGLMQPLGSFSLLSPPKSNFAHLLNTNYNIDTTTTTVVNNNDDNNPFGSVFNLESQKGNEEVEGGLNDDSNEVVNITNMENDGGNNYNVDNNVGDNNNNNIVCNNDDGDDENRHHADGGRKGKKNERTTKSLIAERRRRKKLSDRMHKLRSIVPNISKMDKASILGDAADYLKELQQKINNLQIELESSSPGLFTVAPPTPTLLVPVKEELCHSNMSSPKNQSTKVEVKEREGGTVDIHVSCTHKSDILLSTMKALDSLGLDVHQAVINCFNGFSIDVFKAKQYKEGQKVLPEQIKAVLLNTLSFHGMLLNNNMISGLDGSELILKLSNPSYYVLAIAGATSSVSIAN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00829 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Tsu07g00829 420 MobiDBLite consensus disorder prediction 176 203 - -
Tsu07g00829 420 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 32 380 - -
Tsu07g00829 420 Coils Coil 237 257 - -
Tsu07g00829 420 CDD ACT_UUR-ACR-like 310 370 - -
Tsu07g00829 420 PANTHER TRANSCRIPTION FACTOR SCREAM2 32 380 - -
Tsu07g00829 420 MobiDBLite consensus disorder prediction 178 203 - -
Tsu07g00829 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 261 IPR036638 GO:0046983
Tsu07g00829 420 Gene3D - 189 262 IPR036638 GO:0046983
Tsu07g00829 420 Pfam Helix-loop-helix DNA-binding domain 205 248 IPR011598 GO:0046983
Tsu07g00829 420 SMART finulus 204 253 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00829 Tsu-Chr7 6768046 6778686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00829 201 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 61.111 3.93e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g00829 HLH 6.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00829 - - mtr:MTR_3g104100 306.219