Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00779 ATGGATGGTAATAAGCATCAAGGTGGTGAAGTAAGTATGGTGGAGAAGAAAACAGAAGAAGTTGTGGTGCCAATTTCAAATGTGGGTGGAGAAACTCATTACCATGACCATGATTATGAGTTGAAAGGGGTTGAATATTCGCCTCGCTACGCTTCCAAGTCGCCACCTTTAAACTGTGCTTCCCCTGAGATAAGGTTCATCCCTAGCCCAAATAAGCCCCCAAAAATTCCAACTACAAATGAAAACCTTACTCCAAGAAAAAATCTTGCAAGATCAGTGTATTCCAAGCCCAAATCAAGATTTGGTGAACAACCTTACCCTATTGATGAGACCCTTTTAGAAGAGAATGTTACTTCAACTTTCCAAGAACAATTAGCTGTTAGTTCACCATATAGGAACTCATTCAATAAAGCAGGAAATTCACCTAATAACAAATCTGGAACGGTTAATAGAACTGTTTCGATTACGTCTGTCGTCACTCCTAGGACGCCTTTGATGGCGTCTCCAGGTCCTGCTGGTGAggatgattttgatgaaatcATTTATAAGAAAGTTGAATTAAGTAAAGGCAAGCGAAAGAGACTAACGACTAAGGTTTTGATCGaattgtttgtgtttgtgtgcaTTGCGGGTAGCTTGCTGGCTAGCTTAACTGTTGAGGAACTGAGAAGGACACAGATTTGGAGTTTATGTCTTTGGAGGTGGTGTATGCTTGCGATGGTGACCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAAGAAAAAGGTGCTTTATTTTGTCCATGGATTGAAGAAATGTGTCCAGGTTTTCATTTGGATCGGTTTGGTTCTCCTTACATGGGTGCTTTTTATCAATCGTGGGGTCCAGCGATCTAAATTGGCCGAAAAGATTTTGAATGATGTAACATGGACTCTTGTTTCCCTTCTCATAGGAGCATTTTTGTGGGTTATTAAGACATTATTGCTTAAGATTTTGGCATCAAATTTCCATGTCAAATCTTTCTTTGATAGAATTCAAGAATCAATCTTCCATCAGTATGTTCTGCAGACTCTCTCCGGACCTCCACTTATGGAAGAGGCCGAGAAAGTCGGTGGATCTCAAAGTATTGGCCATTTTAGTTTCAGGAGTACAATTGGTAAAGTCGGCACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAGGATGAAGCAAGAGAAAGTCTCCTCGTGGACTATGAAGATTTTGGTAGATGCAGTCATGAATTCAAGGCTGTCCACAATCTCTAATTCACTAGATGAAACTTTTTATGATGTAGACAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACGTTTTCAGGAACGTTGCTGCTTCCCCTAGTTGCAAGGACATCGATGAGGATGAACTACGTCGGTTCATGATTAAGGAAGAAGTTCCTTTCGTATTTCCCCTACTGGCACAGCCAGAGACAGGGCTAATCACCAGAAAGTCTCTAGCAAATTGGGTGTTGAAGGTATATCAAGAACGTAGAGCACTCGCACATGCCTTATGTGACACTAAAACAGCTGTTAAACAATTAAATAAGCTTGTGACAGTGTTCCTAGTAGTGGTGACCATAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCCATCATCTTTGTTTTTGTAATGCATCCATTTGACGTTGGTGATCGATGTGTTATAGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATACTGACAACAGTATTCTTGAAGCTTAATAATGAAAAACTGTATTATCCAAACTCTGTCCTCGCCACAAAACCGATTAGCAACTATTACAGAAGCCCAAATATGGGTGATAGCGTAGAGTTCTCGGTTGATTTTACGACACCGGTAGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAGAGGTATATGGAGAAGAATCCACAATACTGGCATCCTAATTTTGGCTTGGTAGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTGTTTATGTAACTCACACAATGAACTTTCAAGATTTTGGAGAGAAGAACAAGCGGAGAAGTGAACTAGTGATGGAAGTAAAGAGAATATTTGAAGAGCTCAATATCAGATATAATCTTATTCCACAAGGTGTTCATATCAGACACTTGGAATCTGATGCAAGTTATGTCAGATGA 2316 0.3869 MDGNKHQGGEVSMVEKKTEEVVVPISNVGGETHYHDHDYELKGVEYSPRYASKSPPLNCASPEIRFIPSPNKPPKIPTTNENLTPRKNLARSVYSKPKSRFGEQPYPIDETLLEENVTSTFQEQLAVSSPYRNSFNKAGNSPNNKSGTVNRTVSITSVVTPRTPLMASPGPAGEDDFDEIIYKKVELSKGKRKRLTTKVLIELFVFVCIAGSLLASLTVEELRRTQIWSLCLWRWCMLAMVTFCGMLVTKWFMHIVVFLIEMNFLLKKKVLYFVHGLKKCVQVFIWIGLVLLTWVLFINRGVQRSKLAEKILNDVTWTLVSLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEAEKVGGSQSIGHFSFRSTIGKVGTKKEVIDMAKLHRMKQEKVSSWTMKILVDAVMNSRLSTISNSLDETFYDVDNEQTDKEITNEMEATAAAYYVFRNVAASPSCKDIDEDELRRFMIKEEVPFVFPLLAQPETGLITRKSLANWVLKVYQERRALAHALCDTKTAVKQLNKLVTVFLVVVTIVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKLYYPNSVLATKPISNYYRSPNMGDSVEFSVDFTTPVEKIGALKEKVKRYMEKNPQYWHPNFGLVVKEIENVNKIKMGVYVTHTMNFQDFGEKNKRRSELVMEVKRIFEELNIRYNLIPQGVHIRHLESDASYVR 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00779 771 PIRSF Memb_At2g17000 5 770 IPR016688 -
Tsu07g00779 771 SUPERFAMILY Sm-like ribonucleoproteins 594 653 IPR010920 -
Tsu07g00779 771 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 54 760 - -
Tsu07g00779 771 Pfam Mechanosensitive ion channel 544 750 IPR006685 GO:0016020|GO:0055085
Tsu07g00779 771 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 54 760 IPR016688 -
Tsu07g00779 771 Gene3D - 604 653 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00779 Tsu-Chr7 6406481 6410283 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00779 42 760 Mechanosensitive Ion Channel Family AT5G12080 59.530 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00779 K22048 - gmx:100803107 1156.35