Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00756 atggtggttGATGTCATGGATTCATCAAGCGAAGACAATCATGACCAAGAACAACGTAAATGTCTCAAAAGAACATTTCAACACTTGTATACAAAACCCATTGTCGAAGATTCTCCTTCTGAAGAATGCCTCGTTACCAACATGGTTCCTAGAAGGGATCAGTTAGAGGCTTTTGAAGTTGCAAAAAAGAGGAACACAATTGCAATTATGGATACAGGTTCTGGTAAAACTTTGATAGCTATAATGCTTATCAAAGAAATTGGTCAATCAATTAGGTCAAGTGGAGTGAAAAAGTTGATTATTTTCTTAGCTCCAACAGTTCATCTTGTGAATCAGCAATACAAGAATATAAAAGTTAATACAGATTTTCAAGTTGAAGAATACTACGGGACGAAAGGAGTTGATACGTGGAATTTGAAGTGCTGGCAGAAGGAAGTTAGTGTCAATGATGTGATGGTTATGACACCCCAGATTCTTTTGGATGCTTTAAGAAAAGCATTTCTGAGTATTGAAATGATACGCTTGATGGTTCTTGATGAGTGTCACTGGGCATCCGGCAACCATCCCTATGCAAAAATAATGGCGGAATTTTATCACCGAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAGAGGTGTTTCTTCTACTTTGGCTTGTGAGGATCAGATATCAGATCTTGAAAACATTTTGGATTCTCAGAGCTATGTTGTTAAAGATCGGACAGAGATGGATGCATATATCCCATCTGCAAAAGAGAGTTGTAGATATTATGACCGAGCAAAATTGTCCGCTTTAAGTTTGAAGCCAAAAATTGAAGATTTGTGGTCGAAGTGTGATGTGTTGTCAGAATTTCAAAGTAACTACAAGGATATGGACGATAAATTTAAGACACTGCATCAGCGGATGTCCAATGAACTGGCAAAGATATTGCATTGCCTCGAAGATCTTGGACTGTTGTGTGCTTATGAGGCTGCTTTAATCTGTCATGAGAAATTCTCTAAAATTTTCGGAGAGTGTGAAGTTTACAGAAAAGCCAATCTTCAGTGTGTAACTGTCATTGAAGAAGTGATCCATTTAATTGAAGAATCCCTTCATCTTGCCAATGAAAAGATTTCGGACGGTGAATTTGATTGTTCAAAGGCAGTAGAGATGGGATACATATCACCAAAATTACTTGAACTTATTAAACTCTTTGAAACATTTGGAGAACCTAGTCAGTTAATGTGCCTCATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATTGAAAgattcatgaaaaaaaattcccaGGTATCTTGTCTCACAGTTGCCTATGTAACCGGAAGCAATACATCGGCCGATGCACTGGCTCGTAATAAGCAGACAGAGATATTGGATGCTTTCCGATCTGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCGTGTGTGATACGTTTTGACCTTCCCACGACAGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGACGTGCTAActctcaatttattttgatggtGGAGAGAGGAAATTTGAAGCAAAGAAATCTGCTATTTGACATAATCAGGAGTGAGCGTTCCATGAATGATGCAGCTGTTAGTAAAGACAATGGATGTAATTTAAGGACATTTACCGTTAGGAAAACAGAAGCATACCATGTGGATTCTACTGGAGCATCAGTCAATTTAGATTCTAGTGTTTCTCTTATAAATCAATATTGCGAAAAGCTCCCACATGATAAGTACTCCTCTGCAAAGCCAAATTTTGAGTTTGCGCCTGTGGAGGGAGGAGCGTACGAGTGTAAATTAACACTACCACCTAATGCATCTTTCCAAACAATAGTTGGTCCTTCAGGAAAAGATGTTCGGATAGCAAAGGCTCTTGTATGTCTAGAAGCTTGTAAGCAGCTGCATCAAATGGGCGCCTTGGATGATCATCTTGTTCCATCCATTGAAGATCCTCCAGAAGCAGACAATGTTGTAAAAAACAAGGAGAGTGCAGCTGCAGGTGCAGGAACCACGAAAAGAAAAGAGTTACACGGCACAACCAGCATTCAGGCATTATGTGGTTCATGGGGCAAAAAACTTGATGGGGCCAAATTTCATGcttataaatttgaattcaaGTGTAATATTGTTAGTGAAATTTATTCTGGATTCATTCTTCTGCTTGAGTCAAAACTTGATGATGATGTGGGAAATTTGGAATTAGATCTTTATTTAATCTCAAAGTATGTGAAGACTTCTGTCATTTCATGCGGACAAGTTGATTTGAATGCTGAGCAGGTGGCAAAAGCAAAAAGCTTCCATGAACTCTTTTTCAATGGTTTGTTTGGGAGATTGATTCGTAAGTCAACATCAGGCAATGGGGAAAGGGAGTTTTTACTGCAGAAAGACACAGAATTATTGTGGAGTCCAAAAAACTCATATTTGCTTCTACCGCTTGAGAAGTCAAATGATATATGTATGGGATCTTTGCAAATACATTGGTCTGCAATCAGTTCTTGTGATTCTGCTATTGAATTTGTAAGGCGGAGATTTTCATTGGTTGCAGAAGATTCTGATATTAACAGCAAAATCACATCACCACCTTGTGATACCACCAATTCATCGGATATGGAACGTGAAAGCACAAACTTTTTTCACTTTGCCAATTGTGCTGTTGATGTTAATAATGTGAAAGATACGGTAGCTTTGGCCATTCATACTGGGAAAGTATATTGTATCATTGATGTAGTTGAGAACTCATCCGCTGAAAGTCCTTTTGACGGAAATACTGACAAGTCGGAGGTGACGTTCTCGCAGTATTTCAAGAAAAGGTATGGAATCACATTAAAACATCCAGAACAGCCTTTGTTAAGGTTGAAGCAAGGTCATAATGCACACAATCTTTTTTTGAACATTCATGACGAAGATGGTGAGGACAAGTCATCAGTAACCAAAAAAGCGCCTGTACATGTTCACATTCCACCTGAGCTTCTTTGCCTTCTTGATATTAAAAGAGATGTGTACAAGTCAATGTACTTACTACCATCTCTTATGTACCGTATTGAATCTCTCATGCTATCCAGTCAGCTTAGAGCAGAGATAAATGGCCACACCGACATTTTCAAGATACCTAGCTCTCTGATTCTAGAAGCACTTACAACTTTAAGATGCTGTGAAAAGTTTTCGATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTAAAATATGCAGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGATGCACGAAGGACAATTATCTGCCAAAAGACAATACGCTGTTCGTAATTCAACCCTTCATAAATGTGGAACAGATCGCAATTTACAGGGATATATTCGAGATTCCGCATTTGAGCCGCGCCGTTGGGTTGCTCCTGGACAAGACTGTGTACACCCTACTCCTTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCTTTAGATAAGTTTCATACTGAAGATCCGAAAAAAGTGGTTGGGAAACTGTGTGATAGGGGACACCGCTGGATGTGCTCGAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGGGCATACTATGTGGGTGGTGGATTGGTTGCTGCACTTCACATGATGAAATGGCTTGGGATTGATTCAGGACTTGAACCATCCATGGTTGATGAAGCCATTACTGCTGCATCTCTTCACACATATATGCCAAAAGTAAATGAGATTGCAACCCTTGAGACAAAAATAGGATACGAATTTTCTGTCAAGGGACTCTTAGTGCAGGCAACCACACATTTGTCTGAGTCTGAACATGGAACTGGCTGCTGCTATGAGAGGCTTGAATTCCTTGGTGACTCAGTATTGGACTTTCTCATCACATGGCATCTATATCAGAATCACACGGAAATTGATCCGGGAGAGTTGACTGACTTGCGTTCTGCTTCTGTCAATAATGCCACTTTTGCTCAAGCTGCTGTTAGACGAAACCTTCACCCGCACCTTCTGCATAGCTCAGGATTATTACAAAACCAGATAATGGAATATGCGAAGGTCATTTCTGAATCAGTAGACAACACCATATCACTCCAGGGGATTAAAGCTCCTAAGGCACTTGGAGATCTAGTAGAGAGTATTGCTGGGGCTGTACTGATTGATACCAAGCTTGACCTTGATGCAGTGTGGAAGGTTTTCAATCCTTTGCTATCTCCCATTGTTACTCCTGATAAACTCGAACTTCCTCCATTGCGTGAGTTAAATCAGTTATGTGACTCTCTCGGTTATTTTGTAAAAGTCAAAGTAATTCATGATAAGAATGGAACCATGGAGCATGTTAAGCTTAGTGTACAGTTGCCAGATGCTAAATTGGTTCGAGAGGGAAACggaccaaataaaaaatatgcgAAAGGAGACGCTGCTTTTCATTTGTTGAAGGAACTTGAGAAAAGGGGAATTTCGTACAAGGGAAAACGAGTGATGGATTTCAGTATTCCCGCTGGTCAAACTGAAGAACAATCCCCAAAGCCAGCAGCACATAAAAAGCCTAAATTGGACAAAACTGCAAATCTATCCACTAGTGATCTCAAGGACATTTCCAGCGGATCTTCTGATATTAGTCATACCATTCCAGTTATTCTAGCAACTAACATGAAAAAGAAGGGAGGACCCCGGACTGAACTGAACGCAGTTTGCAAGAGAATGCAGTGGCCATTGCCTTCATTTGAGGCCGAAGAATTTAAAGATAGATCTCTATTTAAATCGTGTGAAGGCCTGGTTGGAAGCAAAGGACTGAACTGTTTTGTGTCGACAATAACTTTGTGCATACCGCGTCATGGTGGTTTAGAATGTAAAGGAGAAGCTAGAGCTGATAAGAAGAGCTCATTTGACTCTGCTGCAGTTCAAGTGCTTTATGAGCTACAACGCCTTGGAAAGATTACTATTGACGATGCTTCCCAATAA 4989 0.3931 MVVDVMDSSSEDNHDQEQRKCLKRTFQHLYTKPIVEDSPSEECLVTNMVPRRDQLEAFEVAKKRNTIAIMDTGSGKTLIAIMLIKEIGQSIRSSGVKKLIIFLAPTVHLVNQQYKNIKVNTDFQVEEYYGTKGVDTWNLKCWQKEVSVNDVMVMTPQILLDALRKAFLSIEMIRLMVLDECHWASGNHPYAKIMAEFYHRANEKPKIFGMTASPVGKRGVSSTLACEDQISDLENILDSQSYVVKDRTEMDAYIPSAKESCRYYDRAKLSALSLKPKIEDLWSKCDVLSEFQSNYKDMDDKFKTLHQRMSNELAKILHCLEDLGLLCAYEAALICHEKFSKIFGECEVYRKANLQCVTVIEEVIHLIEESLHLANEKISDGEFDCSKAVEMGYISPKLLELIKLFETFGEPSQLMCLIFVERIITAKVIERFMKKNSQVSCLTVAYVTGSNTSADALARNKQTEILDAFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMVERGNLKQRNLLFDIIRSERSMNDAAVSKDNGCNLRTFTVRKTEAYHVDSTGASVNLDSSVSLINQYCEKLPHDKYSSAKPNFEFAPVEGGAYECKLTLPPNASFQTIVGPSGKDVRIAKALVCLEACKQLHQMGALDDHLVPSIEDPPEADNVVKNKESAAAGAGTTKRKELHGTTSIQALCGSWGKKLDGAKFHAYKFEFKCNIVSEIYSGFILLLESKLDDDVGNLELDLYLISKYVKTSVISCGQVDLNAEQVAKAKSFHELFFNGLFGRLIRKSTSGNGEREFLLQKDTELLWSPKNSYLLLPLEKSNDICMGSLQIHWSAISSCDSAIEFVRRRFSLVAEDSDINSKITSPPCDTTNSSDMERESTNFFHFANCAVDVNNVKDTVALAIHTGKVYCIIDVVENSSAESPFDGNTDKSEVTFSQYFKKRYGITLKHPEQPLLRLKQGHNAHNLFLNIHDEDGEDKSSVTKKAPVHVHIPPELLCLLDIKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINGHTDIFKIPSSLILEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKYPKMHEGQLSAKRQYAVRNSTLHKCGTDRNLQGYIRDSAFEPRRWVAPGQDCVHPTPCDCGLETLEVPLDKFHTEDPKKVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLVAALHMMKWLGIDSGLEPSMVDEAITAASLHTYMPKVNEIATLETKIGYEFSVKGLLVQATTHLSESEHGTGCCYERLEFLGDSVLDFLITWHLYQNHTEIDPGELTDLRSASVNNATFAQAAVRRNLHPHLLHSSGLLQNQIMEYAKVISESVDNTISLQGIKAPKALGDLVESIAGAVLIDTKLDLDAVWKVFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKVIHDKNGTMEHVKLSVQLPDAKLVREGNGPNKKYAKGDAAFHLLKELEKRGISYKGKRVMDFSIPAGQTEEQSPKPAAHKKPKLDKTANLSTSDLKDISSGSSDISHTIPVILATNMKKKGGPRTELNAVCKRMQWPLPSFEAEEFKDRSLFKSCEGLVGSKGLNCFVSTITLCIPRHGGLECKGEARADKKSSFDSAAVQVLYELQRLGKITIDDASQ 1662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00756 1662 Pfam Ribonuclease III domain 1289 1397 IPR000999 GO:0004525|GO:0006396
Tsu07g00756 1662 Pfam Ribonuclease III domain 1078 1211 IPR000999 GO:0004525|GO:0006396
Tsu07g00756 1662 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 584 675 IPR005034 GO:0016891
Tsu07g00756 1662 SMART PAZ_2_a_3 873 1040 IPR003100 GO:0005515
Tsu07g00756 1662 ProSitePatterns Ribonuclease III family signature. 1289 1297 IPR000999 GO:0004525|GO:0006396
Tsu07g00756 1662 ProSiteProfiles Ribonuclease III family domain profile. 1041 1212 IPR000999 GO:0004525|GO:0006396
Tsu07g00756 1662 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 232 IPR014001 -
Tsu07g00756 1662 SMART helicmild6 427 518 IPR001650 -
Tsu07g00756 1662 Pfam Helicase conserved C-terminal domain 413 518 IPR001650 -
Tsu07g00756 1662 CDD SF2_C_dicer 393 525 - -
Tsu07g00756 1662 Gene3D Ribonuclease III domain 1047 1223 IPR036389 GO:0004525|GO:0006396
Tsu07g00756 1662 Gene3D paz domain 894 1014 - -
Tsu07g00756 1662 PANTHER DICER-RELATED 47 1654 - -
Tsu07g00756 1662 SUPERFAMILY RNase III domain-like 1055 1226 IPR036389 GO:0004525|GO:0006396
Tsu07g00756 1662 ProSiteProfiles PAZ domain profile. 910 1016 IPR003100 GO:0005515
Tsu07g00756 1662 Pfam DEAD/DEAH box helicase 53 212 IPR011545 GO:0003676|GO:0005524
Tsu07g00756 1662 SUPERFAMILY dsRNA-binding domain-like 1423 1494 - -
Tsu07g00756 1662 Gene3D Dicer dimerisation domain 579 676 IPR038248 -
Tsu07g00756 1662 SUPERFAMILY PAZ domain 909 1015 IPR036085 GO:0005515
Tsu07g00756 1662 CDD RIBOc 1060 1223 IPR000999 GO:0004525|GO:0006396
Tsu07g00756 1662 Gene3D - 1571 1651 - -
Tsu07g00756 1662 ProSiteProfiles Ribonuclease III family domain profile. 1253 1398 IPR000999 GO:0004525|GO:0006396
Tsu07g00756 1662 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 47 1654 - -
Tsu07g00756 1662 CDD RIBOc 1269 1419 IPR000999 GO:0004525|GO:0006396
Tsu07g00756 1662 SUPERFAMILY RNase III domain-like 1252 1418 IPR036389 GO:0004525|GO:0006396
Tsu07g00756 1662 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 556 IPR001650 -
Tsu07g00756 1662 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1424 1492 IPR014720 -
Tsu07g00756 1662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 527 IPR027417 -
Tsu07g00756 1662 Gene3D Ribonuclease III domain 1249 1420 IPR036389 GO:0004525|GO:0006396
Tsu07g00756 1662 SMART riboneu5 1060 1232 IPR000999 GO:0004525|GO:0006396
Tsu07g00756 1662 SMART riboneu5 1268 1421 IPR000999 GO:0004525|GO:0006396
Tsu07g00756 1662 Pfam Dicer dimerisation domain 584 669 - -
Tsu07g00756 1662 Pfam PAZ domain 899 1037 IPR003100 GO:0005515
Tsu07g00756 1662 MobiDBLite consensus disorder prediction 1508 1545 - -
Tsu07g00756 1662 Gene3D - 45 282 IPR027417 -
Tsu07g00756 1662 Gene3D - 388 550 IPR027417 -
Tsu07g00756 1662 MobiDBLite consensus disorder prediction 1531 1545 - -
Tsu07g00756 1662 CDD DEXHc_dicer 50 246 - -
Tsu07g00756 1662 SMART ultradead3 46 243 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00756 Tsu-Chr7 6249694 6260611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00756 415 516 Eukaryotic Initiation Factors Gene Family AT1G72730 37.736 1.72e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00756 K11592 - gmx:100806831 2263.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00756 07 6249694 6260611 Tsu07g00756 07 6249694 6260611 ECH
Tsu04g04444 04 52220312 52229576 Tsu07g00756 07 6249694 6260611 ECH