Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00754 ATGGCGGATGTTATGGTAATGAAAGAGATTGAAGACAAAGCCTCGTTTCTCGGAATCGATCTATCTACCATTGATCTTGATTCCATTCATCTCCCACCGGGTGATGACTGTGGAATCATCAGTGATGATGAGAGTGTTCTTCAAGAGGAAAATTCTGGTTCGTTTGATACTGGTTTTGGGAATATTATAGTAGTGGACAATCTTCCGGTTGTTCCGAGGGAAAAATTTGAAAAGCTTGAAGGTGTTGTTCGTAAAATTTACAGTCAGATTGGTGTTATCAAGGATGGTGGTCTTTGGATGCCTGTTGATCCTTCCACTGGAAAGTCCTTAGGTTACTGCTTTATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAAAAGACTCATGGATACAAATTGGATCGTTCTCACATATTTGCCGTGAGTatgtttgatgattttgatcGGTTCATGAAAGTGCCTGATGAATGGGCTCCTCCACCAAACAAGGAATATACTCCAGGGGAAAATCTCCAACACTGGCTTACTGATGCTAAGGGCCGTGACCAGTTTGTGATGCGTGCTGGTAATGATACCGAGGTTTTGTGGAATGATGCTAGACATTTAAAGCCCGATCCTGTTTACAAACGTGCATACTGGACTGAGAGTTTTGTACAATGGTCACCTTTGGGAACATATTTGGCAACAGTTCACCGGCAGGGTGCAGCAGTCTGGGGAGGTGCTACAACCTTCAATCGTCTCATGCGTTACGCTCATCCTCAGGTAAAGCTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCAAGCAACCCTCGTGATGCTAATAGGGTTgtgataaatatatttgatgtgaGGACTGGTAAAGTGATGAGAGACTTTAAAGGAAGTGCTGATGATTTTGCTATTGGAGGTACCGGGGGTGTCACAGGAGTGTCATGGCCTGTATTCAAATGGAGTGGTGGAAGGGATGATAAGTACTTTGCAAGGATGGGGAAAAATGTACTTTCTGTATATGAGACAGAAACATTTTCTCTCGTTGACAAAAAATCCATAAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCTATCATTTCACTGTTTGTTCCTGAGTCAGGAGGTGGTAACCAGCCAGCTAGGGTAAGTCTTGTCCAAATCCCCAGCAAAGAAGAACTCAGGCAAAAGAACCTTTTTAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGGGAATACCTTGCTGTTAATGTTGATCGATATaccaaaacaaagaaaagcACTTACACAGGCTTTGAGCTTTTCCGTATAAAGGAACGTGACATACCCATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCATGGGAGCCAAAGGGACATAGGTTTGCTGTTATTCACGGTGATCACCCTAAGCCTGATATTAGTATCTACTCTATGCGGACTGCTCAGAACACTGGCCGAGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTTTGTTTTGGTCACCGGCAGGTCGCTTCATTGTACTAGCAGGGTTGAAAGGTCTCAATGGACTGTTGGAATTTTACAATGTTGATGACCTCCAAACCATGGCTAATGCTGAACATTTTTGTGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTCACTCATGTTCATGAAATGGAAAATGGATTCAATATATGGTCTTTCAATGGCAAACATCTATATCGGATATTGAAGGATGGCTTCTATCAGtTCTTATGGAGACCAAGGCCAGCATCTTTCTTGACTGCTGAGAAAGAGGAAGAAATTGCAAAGAACTTGAGGAAGTATAGTTTGAAATATGAAGCTGAAGATCAAGATGTTTCATTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGCAGGATCGTGCAAGAAGATTGGGACAAATGGGTTAATCAATGGAAGCAGTTGCATGAAGAAGAGAAGTTAAAGAGGCAAGAGCTGAGGGACGGAGAAGCTAGTGACGAGGAAGAAGAATATGAAGCAAAGGACATTGAAGTCGAGGAAGTAGTTGATGTTTCCAAAGAGATCCTTCACTTTGAGTATGGTCAAGAGTGA 2163 0.4161 MADVMVMKEIEDKASFLGIDLSTIDLDSIHLPPGDDCGIISDDESVLQEENSGSFDTGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKDGGLWMPVDPSTGKSLGYCFIEYNTPQEAELAKEKTHGYKLDRSHIFAVSMFDDFDRFMKVPDEWAPPPNKEYTPGENLQHWLTDAKGRDQFVMRAGNDTEVLWNDARHLKPDPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSIKVENIMDFSWSPTDPIISLFVPESGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDHPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGLNGLLEFYNVDDLQTMANAEHFCATDVEWDPTGRYVATAVTHVHEMENGFNIWSFNGKHLYRILKDGFYQFLWRPRPASFLTAEKEEEIAKNLRKYSLKYEAEDQDVSLLLSEQEREKRRIVQEDWDKWVNQWKQLHEEEKLKRQELRDGEASDEEEEYEAKDIEVEEVVDVSKEILHFEYGQE 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00754 720 PANTHER BNACNNG51870D PROTEIN 5 713 - -
Tsu07g00754 720 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 148 IPR000504 GO:0003723
Tsu07g00754 720 Gene3D - 190 384 IPR015943 GO:0005515
Tsu07g00754 720 SMART rrm1_1 62 144 IPR000504 GO:0003723
Tsu07g00754 720 Pfam Eukaryotic translation initiation factor eIF2A 407 607 IPR013979 -
Tsu07g00754 720 CDD RRM_eIF3B 60 143 IPR034363 -
Tsu07g00754 720 Gene3D - 415 625 IPR015943 GO:0005515
Tsu07g00754 720 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu07g00754 720 SUPERFAMILY RNA-binding domain, RBD 60 141 IPR035979 GO:0003676
Tsu07g00754 720 Gene3D - 56 155 IPR012677 -
Tsu07g00754 720 PIRSF Transl_init_eIF3b 6 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu07g00754 720 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu07g00754 720 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 138 IPR000504 GO:0003723
Tsu07g00754 720 SUPERFAMILY DPP6 N-terminal domain-like 218 601 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00754 5 714 Eukaryotic Initiation Factors Gene Family AT5G27640 75.949 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00754 K03253 - gmx:100817394 1330.85