Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00738 ATGGTGAAGATGGTTAATTCCTCGATTCTTATATTCATGGTTATAACTTGTTGTTGGTTCGTAAATATGTTGGGTGGAATGGCACAAATTAGAAATGAGAGTAATGTTGTAGTCAAAGTTGGTGCTGTACTTGATGTTAGCAATGGAACGGTTGGGATAATAGGGTTGAGCTGCATCAACATGGCCCTCTCAGATTTCTATGACTCTCACTCTCATTACAAAACTAGAATTCAAATCATCCTTAGGGATTCTCATAAGGACGTTGTCACTGCCGCCGCACACGCTCTGGATCTCATAAAAAACGAGGAAGTGCAAGCAATCATGGGACCAGTAACAACAATGGAAGCAAATTTTGTGATACAACTAGGAGACAAAGCACATGTTCCCATTGTAACCTTTTCAGCAACAAGCCCTTCACTAGCATCACTTCAAAGtccatatttttttcaaatatcacAAATTGATTCAGCTCAAGTAAAAGCCATCACCTCAATTATTCAAGCTTTTGGTTGGAAACAAGTTATTCCCATTTACATAGACAATAGTTTTGGTGAAGGAGTCGTCCCTTATTTAACCAATGATCTTCAACAAGCCAATATCCAAATTCCTTATCTAAGTGCAATTTCTCTTTCGGTCACAGATGATGATATCACTCAAGAGCtatataaaataatgaataCTATATCCACTAGAGTATTTATTGTACACATGTCACCAAATCTAGGGTCTAAACTTTTTACCATagcaaaaaaaattgggatgaTGAGTCAAGGTTATGTTTGGATAGTAACCGATAGTATGACCAATGTATTCAATTCATTGGATGTTAAAGTGAGGGAATCAATGGAAGGAGTATTGGGTGTTAGGACTTATATTCCAGAAACAAAAAAGCTAGATGATTTTAGAGTTAGATGGAAAAGAAAATTCATAAGTGACAATCCAACACTTGTTGACATAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACAATTGCATTAGCGATCGCTATCGAGAAGGTTGGAATTGGAAACACACAATTTGGTTACAATGAGAGCGAcacatcaagcaacttttacatgcCTAATTTTGATAAGTTTGGTATTGCACAAAATGGTGAGAAATTGAGTGAAGCTTTGTCAAAAACTAGATTTAATGGTCTTAGTGGTGATTTCAAAGTTGTTGGTGGAAAGTTACAAGCATCAATATTTGAGATAATTAATGTGATTGGTGATGAAGAAAAGAGGGTTGGATTTTGGACACCAGATAAAGGGTTGACTAGGAATTTGGACACAAAAGGACTAATTAGCAATAATATCATATATTCTAGTTCTAAAAATGATATTGGTTCAATCATATGGCCAGGGGATGTGTACTTTATTTCAAAGGGTTGGGAAATTCCTACTGTTGGGAAGAAACTGAAGATAGGAGTTCCAGTTAAATATGGGGATAATTACACCGAATTCttgaaaataacatataatcATAGTACCAGTAAAACAGAAGTCACTGGATTCTGCATTGATGTCTTCAAAGCTGTGTTGGATGTTTTACCTTATGACTTACCATATGAATTTCTTCCATATGCAAAGCCTGATGGTGAGATGGCAGGAAGCTACAATGACTTGATCGCTCAAATTTATTATGGGAAGTATGATGCAGTAGTGGGGGATGTAACGATCATTGCAAATAGATCCAACTATGCTGATTTTACAATGCCATACACAGAATCTGGTGTAACAATGGTTGTTTCAATGAAAGACAAGAGGAAGAAAAATGCATGGACTTTTTTGAAGCCACTGACATGGGATCTTTGGGTAGCATCAACTTGTTCACTTCTATTCATTGGATTTGTTGTATGGATACTTGAACATAGAGTAAACAATGACTTCAGAGGATCACCCTCTCATCAGATTGGCACAAGCTTATGGTTTTCATTTTCAACTATGGTCTATGCTCATAGAGAGAAAGTAGTGAGCAACTTGGCAAGATTTGTGGTGGTTGTATGGCTTTTTGTGGTTTTAATTCTTGTTCAAAGTTACACTGCAAGCTTGACTTCGCTTTTAACAGTTGAACAACTAAGGCCAGCTATTACAGATGTTAATCAACTTTTAAAGAATAAGATGAATGTTGGCTATCTCAAAGgttcttttgtttttggaatTTTGAAGAACTTGGGTTTCCCAGACTCTCAGCTCATTACTTATGAATCACCTGAAGAATGTAATGAACTTTTCATAAAAGGAAGTGTAAATGGTGGAATTGATGCTGCTTTTGACGAAGTTCCCTATGTTAAGCACTTTCTTGGAATTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAAATTTAAAACGGGTGGTTTTGGCTATGCGTTTCCAAAAGGTTCACCTCTTGTAGCTGACATTTCTAGGGCAATTCTAAATGTGACTCAAGGaggcaaaataaaaattattgagaATACATGGTTCAGAGAACCAAGTTGTCTAAATTCCAACACAGAGATTTTCTTAAATAACAACCTTGGACTTGAAAGCTTTTGGGGACTGTTTCTCATAGCAGGGATTGCTTCCTTATTAGCACTCCTAATCTTTGTTGTAACATTTCTATATCAGCACAAACATATTTTGTTAAACAATAATTCAAGTACTTCAATATGGGGACGAATTCGCATATTGGTAAGGATATTTGATCAAAAAGACCTGAACTGTCAGACAATgaaggaaaatgaaaataaaaatgaaagcaGTAACAGTCCTTGTCATGATGATTTATATTCAGTTGAGGCATCTCCAGGCACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATATTTCGGTTTATGGCGATTTTAGTATTAGTCCAAACACAGAAATGGATGATGTgcaaataattaataatcaagAAGTTGGTCCTGTGAACAACTGTGAAATTAACTCCGAAGCAACAGCCAACATGACCTCATCTACAATTGTAACATCCAGTTCCTAA 3003 0.344 MVKMVNSSILIFMVITCCWFVNMLGGMAQIRNESNVVVKVGAVLDVSNGTVGIIGLSCINMALSDFYDSHSHYKTRIQIILRDSHKDVVTAAAHALDLIKNEEVQAIMGPVTTMEANFVIQLGDKAHVPIVTFSATSPSLASLQSPYFFQISQIDSAQVKAITSIIQAFGWKQVIPIYIDNSFGEGVVPYLTNDLQQANIQIPYLSAISLSVTDDDITQELYKIMNTISTRVFIVHMSPNLGSKLFTIAKKIGMMSQGYVWIVTDSMTNVFNSLDVKVRESMEGVLGVRTYIPETKKLDDFRVRWKRKFISDNPTLVDINLNIFGIWAYDATIALAIAIEKVGIGNTQFGYNESDTSSNFYMPNFDKFGIAQNGEKLSEALSKTRFNGLSGDFKVVGGKLQASIFEIINVIGDEEKRVGFWTPDKGLTRNLDTKGLISNNIIYSSSKNDIGSIIWPGDVYFISKGWEIPTVGKKLKIGVPVKYGDNYTEFLKITYNHSTSKTEVTGFCIDVFKAVLDVLPYDLPYEFLPYAKPDGEMAGSYNDLIAQIYYGKYDAVVGDVTIIANRSNYADFTMPYTESGVTMVVSMKDKRKKNAWTFLKPLTWDLWVASTCSLLFIGFVVWILEHRVNNDFRGSPSHQIGTSLWFSFSTMVYAHREKVVSNLARFVVVVWLFVVLILVQSYTASLTSLLTVEQLRPAITDVNQLLKNKMNVGYLKGSFVFGILKNLGFPDSQLITYESPEECNELFIKGSVNGGIDAAFDEVPYVKHFLGIYSCSKYVMVEPKFKTGGFGYAFPKGSPLVADISRAILNVTQGGKIKIIENTWFREPSCLNSNTEIFLNNNLGLESFWGLFLIAGIASLLALLIFVVTFLYQHKHILLNNNSSTSIWGRIRILVRIFDQKDLNCQTMKENENKNESSNSPCHDDLYSVEASPGTHCPPSPSSQTESNISVYGDFSISPNTEMDDVQIINNQEVGPVNNCEINSEATANMTSSTIVTSSS 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00738 1000 CDD PBP1_GABAb_receptor_plant 39 431 IPR044440 -
Tsu07g00738 1000 MobiDBLite consensus disorder prediction 930 949 - -
Tsu07g00738 1000 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Tsu07g00738 1000 Gene3D - 595 726 - -
Tsu07g00738 1000 Gene3D - 760 791 - -
Tsu07g00738 1000 Gene3D - 156 320 - -
Tsu07g00738 1000 PIRSF IGluLR_plant 4 959 IPR017103 -
Tsu07g00738 1000 Pfam Bacterial extracellular solute-binding proteins, family 3 501 826 IPR001638 -
Tsu07g00738 1000 MobiDBLite consensus disorder prediction 935 949 - -
Tsu07g00738 1000 Gene3D - 370 475 - -
Tsu07g00738 1000 Pfam Receptor family ligand binding region 58 411 IPR001828 -
Tsu07g00738 1000 SUPERFAMILY Periplasmic binding protein-like II 453 828 - -
Tsu07g00738 1000 SMART GluR_14 476 827 IPR001320 GO:0015276|GO:0016020
Tsu07g00738 1000 PANTHER GLUTAMATE RECEPTOR 2.9 38 925 - -
Tsu07g00738 1000 CDD GluR_Plant 473 825 - -
Tsu07g00738 1000 Gene3D - 792 825 - -
Tsu07g00738 1000 SUPERFAMILY Periplasmic binding protein-like I 37 457 IPR028082 -
Tsu07g00738 1000 Gene3D - 476 594 - -
Tsu07g00738 1000 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00738 Tsu-Chr7 6046921 6063860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00738 3 946 Ion Channels AT2G29120 48.583 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00738 K05387 - tcc:18587654 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00738 07 6046921 6063860 Tsu07g00738 07 6046921 6063860 ECH