Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00729 ATGTCTTCTAAACTATGCGACTCTTGCAAATCCGCCACCGCTACTCTCTACTGCCGCCCTGACTCCGCTTTCCTCTGCGCCGACTGTGACTCCGAAGTCCACGCTGCTAACAAACTCGCCTCTCGTCATCCTCGCGTCACTCTCTGTGAAGTCTGTGAGCAAGCACCTGCACATGTCACCTGTAAAGCTGATGCAGCTTCTCTATGCATCACCTGCGATCGTGACATCCACTCTGCTAATCCACTCGCAGCACGTCACGAGCGTCTTCCAATCACTCCTTTCTTTGAATCTGAATCCATCACTGTTAAATCTTTtcacaataataacaataacaacaactaCGATGCTGTTAAAGATGAAGCCGAAGCTGCTTCGTGGCTGATCTCCGATCCGAAAGCAGATCTCAACTCTTCTCCTTATATGTTCTCCGATTCCGAAGCTATTCCGTTTATGGATCTAGATTACGGTGCAAGTGCAATCGAACATAAAAACGACGGTGTAGTTCCTGTGCACGGTAACTTCGATCCGTTCGCTTCTACTTACAAGAACAACATACATACAGAGTTAGAAACACCGTCACCGTCGCAGATTAGTAACAGTGTTTCATCGTCGATGGAGGTTGGAGTTGTTCCAGATGGAAACGCTGTATCGGAGATATCAAACTGTGGATACGGTAAAGCGGTGGCGGCTGATCGTGAAGCTAGGGTGTTGAGGTATaaggagaagagaaagaatcGAAGGTTCGAGAAGACGATTCGTTATGCTTCTCGTAAAGCTTATGCAGAAACTAGGCCTAGGATTAAAGGAAGGTTTGCGAAACGTACCGATGCCGTTGATTCTATTTCTGGATACGGCGTCGTTCCGACCTGTTGA 873 0.4559 MSSKLCDSCKSATATLYCRPDSAFLCADCDSEVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAASLCITCDRDIHSANPLAARHERLPITPFFESESITVKSFHNNNNNNNYDAVKDEAEAASWLISDPKADLNSSPYMFSDSEAIPFMDLDYGASAIEHKNDGVVPVHGNFDPFASTYKNNIHTELETPSPSQISNSVSSSMEVGVVPDGNAVSEISNCGYGKAVAADREARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDAVDSISGYGVVPTC 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00729 290 Pfam CCT motif 232 274 IPR010402 GO:0005515
Tsu07g00729 290 CDD Bbox1_BBX-like 5 48 - -
Tsu07g00729 290 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Tsu07g00729 290 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Tsu07g00729 290 ProSiteProfiles CCT domain profile. 232 274 IPR010402 GO:0005515
Tsu07g00729 290 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 1 287 IPR045281 GO:0009909
Tsu07g00729 290 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Tsu07g00729 290 SMART bboxneu5 1 48 IPR000315 GO:0008270
Tsu07g00729 290 SMART bboxneu5 49 91 IPR000315 GO:0008270
Tsu07g00729 290 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 3 1 287 - -
Tsu07g00729 290 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Tsu07g00729 290 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00729 Tsu-Chr7 5956238 5957999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00729 1 289 C2C2-CO-like Transcription Factor Family AT5G24930 49.587 3.64e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tsu07g00729 zf-B_box 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00729 - - mtr:MTR_3g105710 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00729 07 5956238 5957999 Tsu07g00729 07 5956238 5957999 ECH