Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00704 ATGGCAAAGTGTCACCGGAGTAGCAACGCTGATTCAATAGTTCTCGATCACCGCCACCATGCCAAAAACACCACCACCGCCGGCAACTTCCGTCTCTCCGCTTTATTCCGCCGCATCATTTTCGACGCCCTAAGTTGCGGCGGAACATCTCGTCACCGAAATCACCACCGCAACGAATCCATTAGCTCCACCGTATCAACGGCAAGCTTGGCCTCCGGTAATCACAAGGAAAAGCAACAAGTACGAGAAGAGAAGCTATCGGATATTCTGAACATATCGGTGCATGAAATTGAAGTGGAATCTAAGAAGGAAGAGATATTGACGGAGCTGAAACAAGTGGTGAAGGAATTGCGTGAAGAGGATTCGACTAAACGGCGAATCGCGGCGGCGAGAGTAAGGTCACTGGCGAAAGATGATTCAGAAGCAAGAGGCACACTCGCAATGCTTGGAGCAATTTCACCTCTCGTTGGAATGCTCGATTCACAAGATCTTCATTCTCAGATCGATTCTCTCTATGCATTGCTCAATCTCGGAATCGGTAACGATGCAAATAAAGCAGCTATTGTGAAAATTGGTGCTGTTCACAAGATGCTGAAGATCGTTGAATCGTCGTGTGTTGTTGATTCGTCGGTTTCTGAGGCAATCGTTGCGAATTTCCTTGGATTAAGTGCTTTGGATTTGAACAAACCAATAATTGGATCTTCTGGTGCAATACCCTTTCTAGTTAGAACTCTTCAAAATTTAGATAATAGTGGTAAGAGTAGTTCCCAAGTTAAGCAGGATGCTCTTCGGGCTCTTTACAATCTATCGATTAATCAGGAGAATATTTCATTTGTCTTGGAAACCGATTTGGTATTGTTTCTGGTAAACTCGATAGAAGATATGGAAGTGAGTGAGAGAGTTCTTTCGATTCTGAGCAATTTGGTGTCGAGTCCGGAAGGTAGAAAAGCTATCAGTGCTGTTAGGGATGCGATCACAATTTTGGTTGATGTTTTGAATTGGACAGATTCACCTAAATGTCAAGAGAAGGCTTCATACATTTTGATGATTATGGCGCACAAAGCTTATGCTGATAGGCAGGCCATGATTGAGGCAGGGATTGTATCGTCATTGCTTGAGTTGACGCTTGTGGGTACTGCTTTGGCACAGAAAAGGGCATCGAGGATATTGGAATGTTTGAGGGTAGGTAAAGGCAAGCAGGTTTCTGGGAGCTGTGATGGTGGAAACTTGGGTTTAACTGTCTCTGCGCCAATTTGTTCCTCGTCGTCTTCTTTCGTGAAGTCAGATGGAGGAGGTAAAGAGTATTTAGTGGACGAAGCGAACATCATGAGTGATGAAAAGAAAGCAGTGAAGCAACTAGTTCAGCAGAGTTTGCAGAACAACATGATGAAAATTGTCAAGAGGGCTAACTTGAAGCAAGATTTCGTTCCTTCAGAGCGTTTCTCTTCACTCACTTCAAGTTCAACATCAAAGAGCCTTCCGTTTTGA 1488 0.4415 MAKCHRSSNADSIVLDHRHHAKNTTTAGNFRLSALFRRIIFDALSCGGTSRHRNHHRNESISSTVSTASLASGNHKEKQQVREEKLSDILNISVHEIEVESKKEEILTELKQVVKELREEDSTKRRIAAARVRSLAKDDSEARGTLAMLGAISPLVGMLDSQDLHSQIDSLYALLNLGIGNDANKAAIVKIGAVHKMLKIVESSCVVDSSVSEAIVANFLGLSALDLNKPIIGSSGAIPFLVRTLQNLDNSGKSSSQVKQDALRALYNLSINQENISFVLETDLVLFLVNSIEDMEVSERVLSILSNLVSSPEGRKAISAVRDAITILVDVLNWTDSPKCQEKASYILMIMAHKAYADRQAMIEAGIVSSLLELTLVGTALAQKRASRILECLRVGKGKQVSGSCDGGNLGLTVSAPICSSSSSFVKSDGGGKEYLVDEANIMSDEKKAVKQLVQQSLQNNMMKIVKRANLKQDFVPSERFSSLTSSSTSKSLPF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00704 495 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 495 - -
Tsu07g00704 495 MobiDBLite consensus disorder prediction 60 75 - -
Tsu07g00704 495 SMART arm_5 139 179 IPR000225 GO:0005515
Tsu07g00704 495 SMART arm_5 181 224 IPR000225 GO:0005515
Tsu07g00704 495 SMART arm_5 314 353 IPR000225 GO:0005515
Tsu07g00704 495 SMART arm_5 225 271 IPR000225 GO:0005515
Tsu07g00704 495 SMART arm_5 272 310 IPR000225 GO:0005515
Tsu07g00704 495 Coils Coil 100 120 - -
Tsu07g00704 495 Gene3D - 93 252 IPR011989 -
Tsu07g00704 495 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 275 IPR000225 GO:0005515
Tsu07g00704 495 Gene3D - 253 402 IPR011989 -
Tsu07g00704 495 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 495 - -
Tsu07g00704 495 MobiDBLite consensus disorder prediction 48 82 - -
Tsu07g00704 495 SUPERFAMILY ARM repeat 109 393 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00704 Tsu-Chr7 5721721 5723673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00704 105 394 U-box Gene Family AT2G23140 32.990 6.89e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00704 - - gmx:100818576 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00651 01 5731601 5734730 Tsu07g00704 07 5721721 5723673 PCT