Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00701 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGATAGGAAGCCAATTTATAATATTGATGAgtcagatgatgatgattttttggttaaaaaaccTGGGACAAGTCAGGAAAAGTTTGAGAGGATAGATAGAGATGATGCGaaagagGATTTATGTCAAGCCTGTAGTGAAAGCGGAGATCTCCTGAGTTGTGAAACTTGCACCTATGCTTACCATTCTAGGTGTTTACTTCCACCACTTAAAGGTCCGGCTCCCAACAACTGGAGGTGCCCTGAATGTGTTAGCCCTCTCACTGATATTGATAAGATATTAGACTGTGAGATGCGCCCTACTGTAGAAGGTGATGGCGATGATGACACCACAAAATCTGGATCAAAGCAAATTTTTGTGAAGCAATACCTTGTTAAGTGGAAGGGACTATCATATCTGCACTGTACATGGGTGCCCGAGAAAGAGTTTCTGAAAGCTTTTAAAAATCATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCCGCCAATACTTCAGATGAAGACTTTGTTGCCATTCGTCCTGAATGGACTACAGTTGATCGAATAATTGCTTGCAGGGGTGATGATGATGAGAGGGAATATTATGTGAAGTGGAAAGAGCTTCCATATGATGAATGTTATTGGGAATACGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAAATTTCGTTCTAGATCAAGCAAACTTGCTTACATTAAGCAAAAAAGCCGTGTTAATGATGACAGTGAAGTGAAAAAACAGCAGAAAGAATTTCAACAGTATGAACATAGCCCCAAGTTTCTTACAgGTTCTCTACACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACACATGTTATACTTGCCGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTGAAGAGGGTATCTGTGCACATCCACATCTGGTGGTTGCTCCACTTTCAACGCTGCGAAACTGGGAACGTGAATTTGCAACATGGGCCCCTCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATCagagaatatgaattttactaTCCCAAGAAACTGAAGaagatcaagaaaaagaaatctgGTCAGATAGTTAGTGAAAGTAAGCATGACAGGATTAAGTTTGACGTCCTTTTGACATCATATGAGATGATCAACTTAGACACAACTTCATTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGCCTCAAAAATAAGgattcaaaattattttcttcattgaAGCAATATTCTACCAGACACCGTGTGCTCTTGACTGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCATTTCCTTGATGCCGGGAAGTTTGCAAGTCTAGAGGAATTCCAAGAAGAGTTCAAGGATATTAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGCTGGCCCCGCATCTTCTGCGAAGAGTGAAAAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGAGTTGATTTGAGTAGCAAGCAAAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGCCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATGCTTACATGTTAGAAGGAGTTGAGCCAGATATTGATGATCCAAAAGAAGCATTCAAACAATTGCTGGAATCATCAGGGAAGTTGCACTTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACACAGAGTTCTCATATACACCCAATTTCAGCACATGCTTGATTTGCTTGAAGATTACTGCTCTTACAAGaaatggCAGTATGAAAGAATAGATGGCAAGGTTGGTGGAGCTGAAAGGCAAATACGTATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACAAGAGCTGGGGGTTTGGGGATAAACCTTGCAACTGCTGACACAGTTGTTATATATGACAGTGACTGGAATCCTCATGCTGACTTACAAGCAATGGCTAGAGCTCATCGACTCGGACAAACTAACAAGGTGTTGATTTATAGACTTATAACGCGGGGAACTATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATCTTGTTGTAGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATACGGTATGGCTCAAAGGAGTTATTTGCAGATGAGAATGACGAAGCAGGAAAATCCCGTCAAATCCATTATGATGCAGCTGCTATCGATAGGTTGCTGGATCGTGACCAAGTTGTAGATGAAGAGACTACTTtggatgatgaagatgaagatggatTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAGGCTGCAGCAGAGGAGGAGGCAGCACAAAAAAGAGCAATGGAAACCGTGAACAGTTCAGAGAGAACACATTATTGGGAAGAGTTGTTAAAAGACAAGTTTCAAGAGCATAAAGTTGAGGAGTTCAATGCTTTGGGCAAAGGGAAGCGAAACCGCAAATTGATGGTTTCTGTTGAAGAGGACGACCTTGCTGGTCTGGAAGATGTAAGCTCTGACGAAGACGACAATTATGAAGCAGAACTTACTGATGGTGATTCAAATTCCACCGGAACTACTACCAGTAGAAGGCCGTACAAGAAAAAAGCACGTACAGATAGCACTGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCTTTCAGAGTCCTtggttttaatcaaaatcagaGGGCTGCCTTTGTGCAAATTTTGATGAGGTTCGGGGTTGGCGACTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACCTATGAAGAAATCAAAGATTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCTCTACCTTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAAGTGAAGTTTGCAACAGAACATCCTCAAACTCCACTGTTTTCAGATGACATCTTATTACGTTATCCAGGTTTGAAGGGTATAAGGAAGTGGAAGGAGGAGCATGATTTTATGCTACTGCGTGCTGTGTTAAAACATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGATCATCTGTCAAGAGTTGAATCTTCCCGTTATAAATTTACCAGGACCAGGACAAGTTGGCTCCCACATACAAAATGGTGCAAATTTGGCAAATACAGAAATACCAAGCAATGAATCCAGGGAAAATGGTGGAAGTGGCATAGCAGCTGATGGTGCACAGGGTTCAGGTGGGAACCAAACACAGCTATATCAAGAATCGTCCATGTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTTCTTCTTTTAGAAAAGGGGCTAAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAGGGGAAGTAACCAACGAAGAAATTAAAAGTGAACCCAAGTCTACCACTATTCCAAGTTATAAATCAGTGGATTCTGATACCCAGATGATTGATCAATTACCACAAGTAGAAACAATAGCTCCAGAAGATGTTTCGGTTGCTTGTGACAGTGATCCAAATCGATTGGAATTAGTTCGACTTTACAATGAGATGTGCAAGGTAGTTGAGGAAAACCCCACGGATTTAGTACAAGTGTCATTGGCAAGAGAATCAGCAGAGGTCAACACGGTGAAGAAGTTCCCACCACTAGAAACCATCTGTGAAGATGTGAACAGAATTCTAACACCCACAGTTGAACAGCCTATTTCAGATACTCCAATATTAAATTCAGATAACAAATCAGAGGCAATATCACATGGCGACGAAACTAAAGATATGGTAATAGACTCTGATCCTGTAAAAGAAAGCGGCTCAACTCTCGAAATTGAGAAGGAAACACCTAGTCATGCGGAAAAAAATGGAAGTAATACATTGATGGATGAAAGTAGCAACGCTGAGTTGAATGAGAACACACCGAATTCTGATGCTGGAGTCGTTGTATTGGATGCGTAA 4263 0.3941 MSSLVERLRVRSDRKPIYNIDESDDDDFLVKKPGTSQEKFERIDRDDAKEDLCQACSESGDLLSCETCTYAYHSRCLLPPLKGPAPNNWRCPECVSPLTDIDKILDCEMRPTVEGDGDDDTTKSGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKNHPRLKTKVNNFHRQMASANTSDEDFVAIRPEWTTVDRIIACRGDDDEREYYVKWKELPYDECYWEYESDISAFQPEIERFNKFRSRSSKLAYIKQKSRVNDDSEVKKQQKEFQQYEHSPKFLTGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGICAHPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARSVIREYEFYYPKKLKKIKKKKSGQIVSESKHDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDPKEAFKQLLESSGKLHLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCSYKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVVDEETTLDDEDEDGFLKAFKVANFEYVDEAEAAAEEEAAQKRAMETVNSSERTHYWEELLKDKFQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDEDDNYEAELTDGDSNSTGTTTSRRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFATEHPQTPLFSDDILLRYPGLKGIRKWKEEHDFMLLRAVLKHGYGRWQAIVDDKDLKIQEIICQELNLPVINLPGPGQVGSHIQNGANLANTEIPSNESRENGGSGIAADGAQGSGGNQTQLYQESSMLYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEEIKSEPKSTTIPSYKSVDSDTQMIDQLPQVETIAPEDVSVACDSDPNRLELVRLYNEMCKVVEENPTDLVQVSLARESAEVNTVKKFPPLETICEDVNRILTPTVEQPISDTPILNSDNKSEAISHGDETKDMVIDSDPVKESGSTLEIEKETPSHAEKNGSNTLMDESSNAELNENTPNSDAGVVVLDA 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00701 1420 Gene3D - 283 530 IPR038718 -
Tsu07g00701 1420 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 486 IPR014001 -
Tsu07g00701 1420 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Tsu07g00701 1420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 614 775 IPR001650 -
Tsu07g00701 1420 SUPERFAMILY Chromo domain-like 65 178 IPR016197 -
Tsu07g00701 1420 ProSiteProfiles Chromo and chromo shadow domain profile. 193 242 IPR000953 -
Tsu07g00701 1420 MobiDBLite consensus disorder prediction 1149 1175 - -
Tsu07g00701 1420 Gene3D - 102 176 - -
Tsu07g00701 1420 Pfam CHD subfamily II, SANT-like domain 935 1068 IPR009462 GO:0003677|GO:0006338
Tsu07g00701 1420 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Tsu07g00701 1420 MobiDBLite consensus disorder prediction 1339 1420 - -
Tsu07g00701 1420 Coils Coil 840 860 - -
Tsu07g00701 1420 Gene3D - 1038 1213 - -
Tsu07g00701 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 521 IPR027417 -
Tsu07g00701 1420 SMART helicmild6 640 724 IPR001650 -
Tsu07g00701 1420 CDD SF2_C_SNF 609 735 - -
Tsu07g00701 1420 SMART chromo_7 98 169 IPR000953 -
Tsu07g00701 1420 SMART chromo_7 191 245 IPR000953 -
Tsu07g00701 1420 Pfam Chromo (CHRromatin Organisation MOdifier) domain 119 159 IPR023780 -
Tsu07g00701 1420 Pfam Chromo (CHRromatin Organisation MOdifier) domain 194 242 IPR023780 -
Tsu07g00701 1420 MobiDBLite consensus disorder prediction 1388 1412 - -
Tsu07g00701 1420 Pfam CHD subfamily II, DUF1087 847 905 IPR009463 -
Tsu07g00701 1420 CDD CD1_tandem 101 173 - -
Tsu07g00701 1420 ProSiteProfiles Chromo and chromo shadow domain profile. 99 183 IPR000953 -
Tsu07g00701 1420 SUPERFAMILY Chromo domain-like 180 243 IPR016197 -
Tsu07g00701 1420 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1056 - -
Tsu07g00701 1420 Gene3D - 531 755 IPR027417 -
Tsu07g00701 1420 SMART ultradead3 282 497 IPR014001 -
Tsu07g00701 1420 SMART DUF1086_2 914 1071 IPR009462 GO:0003677|GO:0006338
Tsu07g00701 1420 Pfam SNF2-related domain 306 587 IPR000330 GO:0005524|GO:0140658
Tsu07g00701 1420 SMART DUF1087_2 842 908 IPR009463 -
Tsu07g00701 1420 CDD CD2_tandem 191 242 - -
Tsu07g00701 1420 Gene3D - 181 242 - -
Tsu07g00701 1420 Pfam Helicase conserved C-terminal domain 612 724 IPR001650 -
Tsu07g00701 1420 Pfam PHD-finger 53 95 IPR019787 -
Tsu07g00701 1420 SMART PHD_3 52 95 IPR001965 -
Tsu07g00701 1420 MobiDBLite consensus disorder prediction 1352 1387 - -
Tsu07g00701 1420 MobiDBLite consensus disorder prediction 907 924 - -
Tsu07g00701 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 779 IPR027417 -
Tsu07g00701 1420 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1056 - -
Tsu07g00701 1420 MobiDBLite consensus disorder prediction 907 954 - -
Tsu07g00701 1420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 101 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00701 Tsu-Chr7 5677275 5697606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00701 603 775 RAD5 or RAD16-like Gene Family AT5G22750 32.370 1.51e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu07g00701 SNF2_N 6.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00701 K11643 - gmx:100804203 2392.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00652 01 5741389 5750277 Tsu07g00701 07 5677275 5697606 PCT