Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00695 ATGGCCAGACCACAACAGCGTTATCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATTTTaaaaacaagaatttgGCTTGGAACATTTGAAACAGCTGAGGATGCAGCAAGAGCTTATGATGAAGCTGCAAGACTAATGTGTGGTACAAGAGCAAGAACAAATTTCCCTTACAATCCAAATGTGTCTCAATCATCATCTTCTAAACTTCTCTCAGCAACTCTAACTGCAAAACTTCATAGATGCTACATGGCTTCATTACAAATCACTAGACCAATTTCTCTGCAACAACCTCAGAGAGAATCTTCACAAAGTGTCATGAATTCCACAAACAATGTTCCTATGAAAAACagtgaagaaattgaaattgacaCTACAATGAGACATGAAGAAGTGAATGAATCAGAAGGAAATTGGGTTTTCAAGAAAGTTAAAGTTGAAAATTCTCAGCAATTTATTAAGCCTCTTGAAGAAGATCATAATCACATTGAACAAATGATTCAAGAATTACTTCATTATGGGTCTATTGAACTTCGCTCTATTATTCCATCACAACAAGCTCATTGA 588 0.3622 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISLQQPQRESSQSVMNSTNNVPMKNSEEIEIDTTMRHEEVNESEGNWVFKKVKVENSQQFIKPLEEDHNHIEQMIQELLHYGSIELRSIIPSQQAH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00695 195 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Tsu07g00695 195 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Tsu07g00695 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 189 - -
Tsu07g00695 195 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 189 - -
Tsu07g00695 195 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Tsu07g00695 195 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Tsu07g00695 195 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Tsu07g00695 195 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Tsu07g00695 195 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Tsu07g00695 195 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00695 Tsu-Chr7 5582029 5583230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00695 1 192 AP2-EREBP Transcription Factor Family AT5G25190 64.249 9.76e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g00695 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00695 - - gmx:100804510 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00695 07 5582029 5583230 Tsu07g00695 07 5582029 5583230 ECH