Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00690 ATGGCTTATCATAATCAAGACCACCCACTCCATCATTTCACagaccaacaacaacaacaacaacaacaaccaccacaacaacaaccaaaCTCCGATCCTAACCACTCTTTTCAAACCGCACCTAATTGGCTCAACAACGCTCTTCTCCGCAACCTCGAAACCAACGTCAacgcaacaacaacaaccacaacaaacAACAGTACCAATTTCCTTAACCTTGAAACCGCTGGTTCTCAATCCTCCGGTCAATGGTTATCCCGTCCGATTCTTCACCGTAATCAAAGCGAAGTCATCGATAATATCGCCGGAGAAAGTCTTAAGACGGCGGAAAGCGGCGATACAGCGGCGGAGGAAGGTGTTATGAACTGGCAGAAAGCGAAATACAAAGGTGAAATAATGGCGCATCCGCTTTACGAACAGCTTTTATCAGCACACGTGGCGTGTTTGAGAATCGCCACGCCTGTTGACCAGTTGCCCAGAATCGACGCTCAGCTGGCAGAGTCACAGAATGTTGTTGCCAAGTACTCTGCCTTTGGACAGGGCATGCTTGATGATGATAACAAACAACTCGACCATTTCATGTCGCACTATGTTTTGTTGCTTTGTTCATTCAAAGAACAGCTTCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAACAATCTTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACAGGAGCAACAATGTCCGATGACGAAGATGAGCAAGTAGACAGTGATGTTAATCTGTTTGATGGTGCTATGGATGGTTCAGATAATAGCATGGGAGGATTTGGCCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGCGATACAACTTCAGTCCTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTACCCTACAGAGGAGGATAAAGCAAGGTTGGTGCAAGAAACAGGTTTGCAATTGAAACAGATAAATAATTGGTTTATCAATCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAACTTCTAATGTCTTGAAGAGCAAGCGCAAGAGaaaaaagtaa 1182 0.4137 MAYHNQDHPLHHFTDQQQQQQQQPPQQQPNSDPNHSFQTAPNWLNNALLRNLETNVNATTTTTTNNSTNFLNLETAGSQSSGQWLSRPILHRNQSEVIDNIAGESLKTAESGDTAAEEGVMNWQKAKYKGEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAESQNVVAKYSAFGQGMLDDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDVNLFDGAMDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVLKSKRKRKK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00690 393 MobiDBLite consensus disorder prediction 1 40 - -
Tsu07g00690 393 SUPERFAMILY Homeodomain-like 316 380 IPR009057 -
Tsu07g00690 393 CDD homeodomain 317 378 IPR001356 GO:0003677
Tsu07g00690 393 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 391 - -
Tsu07g00690 393 MobiDBLite consensus disorder prediction 12 40 - -
Tsu07g00690 393 Pfam KNOX1 domain 128 169 IPR005540 GO:0003677|GO:0005634
Tsu07g00690 393 SMART KNOX1_2 126 170 IPR005540 GO:0003677|GO:0005634
Tsu07g00690 393 Pfam ELK domain 294 315 IPR005539 GO:0003677
Tsu07g00690 393 SMART ELK_2 294 315 IPR005539 GO:0003677
Tsu07g00690 393 SMART KNOX2_2 179 235 IPR005541 GO:0003677|GO:0005634
Tsu07g00690 393 MobiDBLite consensus disorder prediction 372 393 - -
Tsu07g00690 393 SMART HOX_1 316 381 IPR001356 GO:0003677
Tsu07g00690 393 Pfam Homeobox KN domain 334 373 IPR008422 GO:0003677|GO:0006355
Tsu07g00690 393 ProSiteProfiles 'Homeobox' domain profile. 314 377 IPR001356 GO:0003677
Tsu07g00690 393 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 28 391 - -
Tsu07g00690 393 Pfam KNOX2 domain 186 234 IPR005541 GO:0003677|GO:0005634
Tsu07g00690 393 Gene3D - 315 376 - -
Tsu07g00690 393 ProSiteProfiles ELK domain profile. 294 314 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00690 Tsu-Chr7 5522678 5526077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00690 1 391 Homeobox Transcription Factor Family AT5G25220 64.302 0.0 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tsu07g00690 KNOX2 6.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00690 - - gmx:100810257 587.03