Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00649 ATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTGTTAAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAAGCAGCTGCTAGAGCATATGATCAAGCTGCTATTTTGATGAATGGTCAAAGTGCTAAGACTAATTTTCCAAAGAAACAAGGTGAAGATGTTACTGCTATTGACACCTCTAATAGTAAtaatggtggtggtgatgattCTTTCTTGTCTCCCAAGGCTCTTTCTGAGCTACTTAGTACTAAGCTTAGAAAGTATTGCAAAGACCCTTCTCCCTCACTTACTTGTTTGAGGCTAGATAATGATAATTCTCACATTGGAGTGTGGCAAAAAAGAGCTGGAACACATTCTGATTCTAATTGGGTTATGAGAGTTGAGCTTGGTGGGAAGAAAAAGACTGTTGAATCAGAGATAGGGTCAAAAGAAGATATTATTGATGGTGGTAGTAATAATGGTAATGCTGATGATATTCAAAATAGGGTGATAGTAGAAGAAGAGGAAAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAATTATCCATGTGGTtcaatttcaagtaattaa 630 0.373 MVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPKKQGEDVTAIDTSNSNNGGGDDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDNDNSHIGVWQKRAGTHSDSNWVMRVELGGKKKTVESEIGSKEDIIDGGSNNGNADDIQNRVIVEEEERVALQMIEELLNWNYPCGSISSN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00649 209 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Tsu07g00649 209 MobiDBLite consensus disorder prediction 63 86 - -
Tsu07g00649 209 MobiDBLite consensus disorder prediction 63 88 - -
Tsu07g00649 209 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Tsu07g00649 209 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Tsu07g00649 209 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Tsu07g00649 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 206 - -
Tsu07g00649 209 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Tsu07g00649 209 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Tsu07g00649 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 206 - -
Tsu07g00649 209 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Tsu07g00649 209 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00649 Tsu-Chr7 5127241 5128392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00649 4 207 AP2-EREBP Transcription Factor Family AT5G25390 60.000 2.21e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g00649 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00649 - - lang:109326202 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00649 07 5127241 5128392 Tsu07g00649 07 5127241 5128392 ECH
Tsu07g00649 07 5127241 5128392 Tsu01g00694 01 6108943 6110341 ECH
Tsu04g03954 04 48237936 48239387 Tsu07g00649 07 5127241 5128392 ECH