Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00609 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACTTAGTTAAGAGGGATTTGAAAGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCCTCTGACCCTGTTGCTATTGATGCCCCTGGAGGTTTTCTGTTTGAATGGTGGTCGGTTTTCTGGGACATTTTTATAGCCAGGACTAATGAGAAGCACTCCGAGGTGGCGGCATCGTATATAGAGACTCAATTAACTAAGGCAAGGGAGCAAcagcaacagcaacaacaacaacaacatcagcAGCCTCAGTCTCAGCAGTCACAGCATGCACAGCAGCAACAACACATACAGATGCAACAACTTATGTTGCAGAGGCAAGcacagcagcagcaacaacagcagcagcagcagcaccAGCAACAGCCACAATCGCAGCAGCAGCCACAACAGCAGCAAAATAGGGATAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGCAACCCGGGAACTGCAAATGCAATAGCAACAAAGATGTACGAGGAAAGGTTAAAAGTTCCCCCACAGAGGGATTCTTTGGACGATGCGGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGTAGCTAGTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCACTGCTGGCGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACACCGGATATGAAGAGTGAGATAAATCCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCACTGTTAGGAATTTCCGGATCAAATCAAGGGAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAACCATTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGGCATCACCATCTGTCAGCGAAGAAAGTAGAAGGTTGAGAATGCTTTTGAGTAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCAAATCCTGGGGGCGATGTGTTATCGAATGTTGGATCACCTATTCACGGCGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTACTGAAGTTGAAACTGGCTCAGTtacagcagcaacaacaacagcagcagcaacatCAACAACAGTCGAGCATCAATGCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAACCATAGCATTCACCAGCAAGATAAAGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCTAATAGTTCAGGAACGGCAAATACGGCAGGCCCATCAGCTAGTTCAGCACCCTCAACTCCCTCAACTCATACTCCTGGAGATGCTATTTCAATGCCTGCCTTGCCTCATAATAGTAGTTCTTCAAAGTCTCTAATGATGTTTGGCACTGACGGTACTGGAACTCTTACATCACCTTCAAATCAGTTGTGGGATGATAAGGATCTTGATTTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTTTAGATGAAAATGTAGAGTCCTTTTTATCGCAAGATGATACAGACCCTAGAGATCCCGTTGGCCATTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGCAAAATTGCTTGTTGCCATTTCTCATCTGATGGAAAGTTACTCGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTACACGGATTCACTAAAACAAAAAGCTGTTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTCCAAGCATGCCACGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCCCTCCGCACTTTTACGGGACATTCTACATCTGTTATGTCGCTAGATTTCCACCCAAATAAAGATGATCTTATCTGCTCCTGTGACGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGGTTAGATTCCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCTGAGAACATTGTGTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGTCATACAAAGACAATAAATTCTGTGTGTTGGGATCCATCTGGAGAGTTGATGGCATCAGCGAGTGAGGACTCCGTTAGGATTTGGACTCTTGGAATGGGAAGTGAAGGAGAATGTGTTCACGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTTCCTTCGCTGCTCTTCATTGGCTGTTATCAGTCATTGGAGCTATGGAACATGGCTGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTTTAATTACTGCCTTGTCTGTTTCAACTGTAAATGGTTTGATTGCTTCTGCCAGTCATGACAAGTTTATCAAGTTATGGAAAAACCCAAAACTCCCTTCCTCGTTCGCTCATTCATTCTTGTTCTCAACCGCTCTCTTTCGCTTGTTGCTCTTGTTTCATCACTGTCTCTACCTCTGCATTCTGTTGCCGATTGCTTGTTCAGTTATGGCTGCTTTCATCTCCAAAAGACTACTACGTTCTTATGGATCATTGCATTCACTAGGACGACGCTGCTTTGATTCACCTAATGCGGAGAAAGTGGTTTCTGCACAACATTTCCTGACCGGATCAATGATCCAACGGTTTTCAACTTCTTCTATTTTAACTCCGGGGTCTGATGAAGGTGCATTTCCATCTGACTTATTGTCCAAAACGCCTCTGGCAACATCTGAGCGTGATATAGGGCTTTGTCAGGATCTTTTAATTCCAGTTACCAACTTTCATAACGAAGACAAGGGTTTTATGGTTTTAGCTGGAGACGTTTTTGATTTGCCTATTCGGAAAGATATAATTCACCGTGTTGTTTTGTGGCAGCGCGCAAAACGCCAACAGGGAACTCACTCAACAAAAACTATCAGTGAAGTCAGTGGGACTGGGAGAAAGCCTTGGAACCAAAAGGGGACTGGTAGAGCAAGGCACGGGTCACTGCGTGGACCTCAGTTCAGGGGTGGTGAAACGAAGCATGGTCCTAAGCCTCGAAGTCACGCTTTCAAACTCAATAAGAAGGTTCGGCGACTGGGACTAAAGATTGCTCTGTCAGCTCGTGCAGCAGAAGGAAAGCTTCTTGTGTTTGAGGATTTGGAGGTTCCCACACATAAAACCAAGAACTTTTTGAATTATTTCAAACAACTGGAGGACACCAAGAAACTTCTGATTGTAGATGAAGGCCCCATAAATGAAAAGCTAAAGTTAGCTACACAAAATCTGCATTATGTTAACTTACTTCCAGTCATTGGATTAAATGTCTACAGTATTTTGTTGCACGACACTTTGGTGATGTCCAAGGAAGCAGTGAACAGAATTGTTGGGCGTATGCACACTCCAATCTCCCGTAATTCCACACCTCAATAA 3729 0.4318 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLTKAREQQQQQQQQQHQQPQSQQSQHAQQQQHIQMQQLMLQRQAQQQQQQQQQQHQQQPQSQQQPQQQQNRDRAHLLNGSANGLGGNPGTANAIATKMYEERLKVPPQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAVASGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDMKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSVSEESRRLRMLLSNRNIGLNKDGLSNPGGDVLSNVGSPIHGGGPPFPRGDTDMLLKLKLAQLQQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSIHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSASSAPSTPSTHTPGDAISMPALPHNSSSSKSLMMFGTDGTGTLTSPSNQLWDDKDLDLQADVDRFVEDGSLDENVESFLSQDDTDPRDPVGHCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKAVLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQVRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTINSVCWDPSGELMASASEDSVRIWTLGMGSEGECVHELSCNGSKFHSCVFHPTFPSLLFIGCYQSLELWNMAENKTMTLSAHDGLITALSVSTVNGLIASASHDKFIKLWKNPKLPSSFAHSFLFSTALFRLLLLFHHCLYLCILLPIACSVMAAFISKRLLRSYGSLHSLGRRCFDSPNAEKVVSAQHFLTGSMIQRFSTSSILTPGSDEGAFPSDLLSKTPLATSERDIGLCQDLLIPVTNFHNEDKGFMVLAGDVFDLPIRKDIIHRVVLWQRAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRGPQFRGGETKHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPTHKTKNFLNYFKQLEDTKKLLIVDEGPINEKLKLATQNLHYVNLLPVIGLNVYSILLHDTLVMSKEAVNRIVGRMHTPISRNSTPQ 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00609 1242 MobiDBLite consensus disorder prediction 462 522 - -
Tsu07g00609 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 693 IPR001680 GO:0005515
Tsu07g00609 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 815 IPR001680 GO:0005515
Tsu07g00609 1242 Gene3D - 1016 1240 IPR023574 GO:0003735|GO:0005840|GO:0006412
Tsu07g00609 1242 SUPERFAMILY Ribosomal protein L4 1028 1230 IPR023574 GO:0003735|GO:0005840|GO:0006412
Tsu07g00609 1242 Pfam Ribosomal protein L4/L1 family 1043 1228 IPR002136 GO:0003735|GO:0005840|GO:0006412
Tsu07g00609 1242 Coils Coil 401 421 - -
Tsu07g00609 1242 MobiDBLite consensus disorder prediction 412 541 - -
Tsu07g00609 1242 Hamap 50S ribosomal protein L4 [rplD]. 1033 1232 IPR013005 -
Tsu07g00609 1242 Pfam LisH 10 36 IPR006594 GO:0005515
Tsu07g00609 1242 MobiDBLite consensus disorder prediction 89 154 - -
Tsu07g00609 1242 TIGRFAM rplD_bact: 50S ribosomal protein uL4 1043 1227 IPR013005 -
Tsu07g00609 1242 CDD WD40 616 900 - -
Tsu07g00609 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 647 IPR001680 GO:0005515
Tsu07g00609 1242 SMART Lish 8 40 IPR006594 GO:0005515
Tsu07g00609 1242 Gene3D - 746 917 IPR015943 GO:0005515
Tsu07g00609 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 693 - -
Tsu07g00609 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 868 900 IPR001680 GO:0005515
Tsu07g00609 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 783 815 - -
Tsu07g00609 1242 SUPERFAMILY WD40 repeat-like 614 900 IPR036322 GO:0005515
Tsu07g00609 1242 MobiDBLite consensus disorder prediction 1072 1089 - -
Tsu07g00609 1242 Pfam WD domain, G-beta repeat 656 690 IPR001680 GO:0005515
Tsu07g00609 1242 Pfam WD domain, G-beta repeat 697 734 IPR001680 GO:0005515
Tsu07g00609 1242 Pfam WD domain, G-beta repeat 779 813 IPR001680 GO:0005515
Tsu07g00609 1242 Pfam WD domain, G-beta repeat 618 647 IPR001680 GO:0005515
Tsu07g00609 1242 Pfam WD domain, G-beta repeat 863 900 IPR001680 GO:0005515
Tsu07g00609 1242 Gene3D - 599 745 IPR015943 GO:0005515
Tsu07g00609 1242 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 900 - -
Tsu07g00609 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 701 739 - -
Tsu07g00609 1242 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Tsu07g00609 1242 SMART WD40_4 820 859 IPR001680 GO:0005515
Tsu07g00609 1242 SMART WD40_4 861 900 IPR001680 GO:0005515
Tsu07g00609 1242 SMART WD40_4 694 734 IPR001680 GO:0005515
Tsu07g00609 1242 SMART WD40_4 609 648 IPR001680 GO:0005515
Tsu07g00609 1242 SMART WD40_4 776 814 IPR001680 GO:0005515
Tsu07g00609 1242 SMART WD40_4 737 773 IPR001680 GO:0005515
Tsu07g00609 1242 SMART WD40_4 651 690 IPR001680 GO:0005515
Tsu07g00609 1242 ProSitePatterns Trp-Asp (WD) repeats signature. 677 691 IPR019775 -
Tsu07g00609 1242 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 900 IPR044716 GO:0003714
Tsu07g00609 1242 MobiDBLite consensus disorder prediction 412 451 - -
Tsu07g00609 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 868 900 - -
Tsu07g00609 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 743 IPR001680 GO:0005515
Tsu07g00609 1242 MobiDBLite consensus disorder prediction 1072 1120 - -
Tsu07g00609 1242 Coils Coil 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00609 Tsu-Chr7 4839535 4852805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00609 695 899 Miscellaneous Gene Families AT5G08390 24.762 1.25e-12 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tsu07g00609 Ribosomal_L4 6e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00609 - - gmx:100816263 1253.81