Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00601 ATGGCAGATCCTACTCAACATGTCATCATTGATATATCAAATTCAACTTCTGAAACTGCTCCTCGTGTTAATGGGGTAGAAGATTTTGGTGGTgggggtggtggtggtggtagaTTGCGTGTTTCTCAACAAACTATGAATAGATCAAACTCTAGGTTGATTAGAGGAAATCCACCATCACGAGGAGCGTTGAATTCGGGGTTTTGGATTTCTTTGCAATTTGTTTTCACATTAACTCAAATTGTTGCTTCTTTTGTTGTTCTTACTTCGTCAAGAAATGAACATCCACATGCTCCATTGTTTGCTTGGATTGTTGGTTATGCCCTTGGATGTATTTTTTGTCTCCCTTTGCTCATTTGGCGTTATTATTATGCTAGAGAACGATATTTATCTCAAATGAATACAACCAATGATGATTCTTCTGGTACACTTCTTTCGAATTCCACCACAATTCAAGGTGAAGATGATGTTCCTGATGTTGTTGTGGCTTCCTCCAGAACCAATCAAGTTTCATGGTTGTTGAATCAGAGGCTAAATATACTCATGGATTACTTCAAAATCACCATAGATTTGTTTTTTGCAATATGGTTTGTTATTGGAAATGTATGGATTTTTGGAGAACAGTCATCCGCTCATGAAGCGCCTAACTTGTACCGGTTATGTGTAGTGTTTCTTACTCTTAGTTGTATCGGCTACGCAATGCCCTTCATTCTATGTTTAACGATTTGTTGCTGTCTTCCTTGTATAATATCCACTCTTGGGGTCACAGAGGATGTAGCGCAAACCCGAGGTGCAACCTATGAAACTATTAATGCTCTACCAactcataaatttaaaatgatgaaaAGTAAAATTGAAGACGAAAGTAGTCCAACAATTATTGAAGGTGGAGTTGTAGCCGAAGGAACTGAAAAGGAACGCATGATATCCGGAGAAGATGCAGTTTGTTGCATATGCATATTGAATTATGAAAATGAAGACGAGTTGAGAGAATTGCCATGTTCACATCTTTTCCACAAAGAGTGTGTAGACAAGTGGTTGAAGATAAGTGCATTATGCCCCCTTTGCAAGAGTGAAGTTGGTGGGGATGCATCAGGAATAGTCAATGAAGAAAATGCCACCCAACAAAGGAGTGAAAGTAGAGTTGAGAATAATCATGCCAGTACCTCATTGTAA 1176 0.3716 MADPTQHVIIDISNSTSETAPRVNGVEDFGGGGGGGGRLRVSQQTMNRSNSRLIRGNPPSRGALNSGFWISLQFVFTLTQIVASFVVLTSSRNEHPHAPLFAWIVGYALGCIFCLPLLIWRYYYARERYLSQMNTTNDDSSGTLLSNSTTIQGEDDVPDVVVASSRTNQVSWLLNQRLNILMDYFKITIDLFFAIWFVIGNVWIFGEQSSAHEAPNLYRLCVVFLTLSCIGYAMPFILCLTICCCLPCIISTLGVTEDVAQTRGATYETINALPTHKFKMMKSKIEDESSPTIIEGGVVAEGTEKERMISGEDAVCCICILNYENEDELRELPCSHLFHKECVDKWLKISALCPLCKSEVGGDASGIVNEENATQQRSESRVENNHASTSL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00601 391 ProSiteProfiles Zinc finger RING-type profile. 316 357 IPR001841 -
Tsu07g00601 391 SMART ring_2 316 356 IPR001841 -
Tsu07g00601 391 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 42 378 - -
Tsu07g00601 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 363 IPR013083 -
Tsu07g00601 391 Pfam Ring finger domain 316 357 IPR001841 -
Tsu07g00601 391 SUPERFAMILY RING/U-box 308 361 - -
Tsu07g00601 391 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 42 378 - -
Tsu07g00601 391 MobiDBLite consensus disorder prediction 18 37 - -
Tsu07g00601 391 MobiDBLite consensus disorder prediction 369 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00601 Tsu-Chr7 4788192 4789628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00601 60 366 C3H Transcription Factor Family AT1G80400 54.167 7.26e-118 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00601 - - gmx:100775815 452.981