Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00588 ATGGATAATTTAGACGATTTGTCAGCGGTTAATTCGGATGATGATAGAGATCTTAATGATTTGTGTGATCAGAATGAAACTGTAAAAATGAATTTAGGTGCTGAGGAAGACGGTAAATATAAAAAGATTTCTAACTTAACAGCTGATGAGATACTAGGTCTAGATTTTGATAGTGATCAGGAAGCTTATGATTTTTACTGTGAATATGCAAGATGGCATGGTTTTGTGGTACGGAAAGATGAGGTGACTCGTGATGATAATGGGAAAGTAATAATGCGTCAGTTTGTATGTAATAGAGAAGGGTTTAGTAACAAAAAACTATTAACAAGACGTAATGGTCGAACTAATTGTCTAGCTAGGCTTCGTGTACGCTACAGTTTGAAAGCATCGAGATGGAAAGTGAAATGTTTTGAAGAGGTTCATAACCATGAACTAGCTCCTTCAAGATATACACACTTGGTCGCTTGCCGTGGAATGAAGGATGCTGATAAAGTGGATAAAGCTCAGGCTGATAGTTCGAATGATGTTAGAACTGGTTATATAATGGGGTACAATGTGGCTCAAAAGGGTTCATCTGTTGGTGTTcgtttttcaaagaaaaatctATACAACGGTTTTAATAGCAAAATCCGTGGCGAGATTAAAGATGGCGATGTTGTTGCTGCCTTAAGTTATCTTAGTGGGAAGGCAAGCAATGATCCTATGCTATATGCGAAGTTTACAACTACCGGTGATGGTAGATTGAAGCAGCTTTTTTGGGCAGATGGATGTAGCATATCTGATTTTCTATGTTTCAACGATGTTCTTTCACTTGACATGACGCACGAGAACGGATACAATTGTCCTTTGGTAATTTTCTCTGGGTGCAATCATCATTCTCAAACAATTATATTTGGTTGTGCTTTGGTGTCAGATGAAACAATTGAGACATATAAGTGGGTCTTAAAATCTTTTTCAGAAGCAATGCGAAACAAACATCCCAAAGTTGTTGTGACAAATGGGGATGAGGTTATGATGGAGGCTATAAAGCATGCTTTTCCAGATTCGTGTCATCAACTATGTGTTTGGAACTTGCACAAGAATGCATGTAAAAATGTCGAGAGCTCTTCATTTCCGGAGGATTTCAAAACGGCAATTTACTCAAATTTCACCccaaaagaatttgaagatttttgGATAAAGATGGTTGTATGGCACGATATTGTGGGGAATGAGTGGGTTTCTAAAACCTATGAGAATAGGTCATTGTGGGCCACTGCATACCTCCGTGATAAGCTTTTTGGTCGTATACAAACTACGTGTCATTGTGAAACTATTGACTCAATCATCAAGAAATATATAAGGAAGAAAAGTAgtgtttttgagtttatgtatgATTTTGAGGAGACTTTGAGAAAATATAGAAACGATGAACTGATGGCTGATAATAAGTCTTTATTTTCAGAACCTGTGTTGACCACGTCTCTTCAAGAGTTTGAGAAAGATGCTGCAAAAATTTACACAGCAGAGCTTTTTAAAGAAGTTAAAGAGCAGATTGTATTGGCTGGTGCGTTAAATGTTATTAAGCGGATGGTAAATGGGGAGAAGGTTATCTTCAAGCTAACCAAGTATTGTCATCCCAATATTGAAACAAAAGTTGTTTATGATACTTCAAAGTCAGCATTTAATTGTGCGTGTAGACATTTTGAGTCTCGTGGCATTCCGTGTTCGCATATTTTTCGTGCCATGATATTTGAGCATGTAGACCATATTCCAAGCAGTTTGATTTTGACGCGGTGGACTAAGAATGCTAAGATTGCCTTACTGTCGTCAAATTCGATGGATGGAATAGATTATGATGTGATGGAGTTTTCTCAGTTTGCGGCCGATGCTGCTTTTACTAGGTTGTGGCAGGTAGCCTTAAAAAACAAGGAACACTACAATGAGATCATGGATGACATATTGAAGCTTACTAACAAGTATAAGAAGATGAACGCTCTCGTTGACACGCAAAGCTCGTCATCAGAGCACATTGGTGATCCCAACATAGATGAGACCAAAGGTACTCCTAAGAATAAAAAGCTTGGCACAAAGAGGGCAAGTCATAGTTCAAATTGTAATAGCACAAAGGACAATGTTAAAACATGTTCAATGAATGTTTGTTTAAATGGTAAGAGTATGAATGATGAGGAGTTTTCTCATCCAGAGTCTTCTAAATTCAGCACGGCAAATGACAGTGATAAAGAAATATTGGCATCTGATGTAAACTTGCAGGATAAAGAAATATTGGCATCTGATGTAAACAATGGTTGTGACACTAAAGATAAACATAGTGAATGCTGTAATCAGAAgcaaaaaaaagcaaaagagttgacacaaaaatcaaataatggCAGTGCTGGTTATTCTGGTGGAGGTCAGCATGTTAATTCCAAAACGCCGTTTATATTACCTAAAATGCAATTCTCACCATATGGTTATGTCACTCCAAGCCATGGATGGTGGAACTTGCCCAACTATAGTGGAGTTCCTATTTTACCACAAGTACCCCAGTTTTATTATGGAGTGCCGTTTGGTAATAATGACACGCCACAAATGGGATCGTTATCAGAAGCCATGAAAAATTATGGTCAAACAAGTGGAAATGGTGTTCAACCTTAG 2640 0.3648 MDNLDDLSAVNSDDDRDLNDLCDQNETVKMNLGAEEDGKYKKISNLTADEILGLDFDSDQEAYDFYCEYARWHGFVVRKDEVTRDDNGKVIMRQFVCNREGFSNKKLLTRRNGRTNCLARLRVRYSLKASRWKVKCFEEVHNHELAPSRYTHLVACRGMKDADKVDKAQADSSNDVRTGYIMGYNVAQKGSSVGVRFSKKNLYNGFNSKIRGEIKDGDVVAALSYLSGKASNDPMLYAKFTTTGDGRLKQLFWADGCSISDFLCFNDVLSLDMTHENGYNCPLVIFSGCNHHSQTIIFGCALVSDETIETYKWVLKSFSEAMRNKHPKVVVTNGDEVMMEAIKHAFPDSCHQLCVWNLHKNACKNVESSSFPEDFKTAIYSNFTPKEFEDFWIKMVVWHDIVGNEWVSKTYENRSLWATAYLRDKLFGRIQTTCHCETIDSIIKKYIRKKSSVFEFMYDFEETLRKYRNDELMADNKSLFSEPVLTTSLQEFEKDAAKIYTAELFKEVKEQIVLAGALNVIKRMVNGEKVIFKLTKYCHPNIETKVVYDTSKSAFNCACRHFESRGIPCSHIFRAMIFEHVDHIPSSLILTRWTKNAKIALLSSNSMDGIDYDVMEFSQFAADAAFTRLWQVALKNKEHYNEIMDDILKLTNKYKKMNALVDTQSSSSEHIGDPNIDETKGTPKNKKLGTKRASHSSNCNSTKDNVKTCSMNVCLNGKSMNDEEFSHPESSKFSTANDSDKEILASDVNLQDKEILASDVNNGCDTKDKHSECCNQKQKKAKELTQKSNNGSAGYSGGGQHVNSKTPFILPKMQFSPYGYVTPSHGWWNLPNYSGVPILPQVPQFYYGVPFGNNDTPQMGSLSEAMKNYGQTSGNGVQP 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00588 879 MobiDBLite consensus disorder prediction 663 701 - -
Tsu07g00588 879 ProSiteProfiles Zinc finger SWIM-type profile. 542 580 IPR007527 GO:0008270
Tsu07g00588 879 Pfam MULE transposase domain 268 361 IPR018289 -
Tsu07g00588 879 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 42 712 - -
Tsu07g00588 879 Pfam FAR1 DNA-binding domain 64 146 IPR004330 -
Tsu07g00588 879 MobiDBLite consensus disorder prediction 858 879 - -
Tsu07g00588 879 MobiDBLite consensus disorder prediction 785 800 - -
Tsu07g00588 879 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 42 712 IPR031052 GO:0006355
Tsu07g00588 879 MobiDBLite consensus disorder prediction 780 800 - -
Tsu07g00588 879 SMART 26again6 555 582 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00588 Tsu-Chr7 4684422 4688452 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu07g00588 MULE 2.8e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00588 - - ccaj:109792835 983.4