Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00581 atggCAGTGAAACCTACAAAAGCTGAGAAGAAGCAGAATTATGATGCTAAACTCTGCCAACTTCTTGATGAATTTACCCAAATCCTTGTTGTTAATGCTGACAATGTTGGATCAAATCAGTTACAGAGTATTCGTAGAGGTTTACGTGGTGATTCTATTGTTCTTATGGGAAAGAATACCATGATGAAACGTTCTGTTCGTATTCATGCTGAGAAAACTGGAAACAATGCTTTTCTTAACCTCATTCCTCTTCTTGTTGGAAATGTAGGTTTGATTTTCACAAAAGGTGACTTGAAGGAAGTTAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTCGTTGTTCAACCAGGAAACACAGGGCTCGACCCCTCTCAGACCTCTTTTTTCCAGGTGCTCAATATCCCAACCAAGATTAACAAGGGTACTGTTGAAATCATTACCCCTGTGGAACTTATCAAGAAAGGAGACAAGGTTGGATCTTCTGAAGCTGCATTGCTTTCCAAGTTAGCCATTAGGCCCTTTTCATATGGGCTCGTTGTCCTCTCTGTTTATGATAATGGTTCAGTGTTTAGCCCCGAGGTTCTTGACCTTACTGATGATGACCTTGTTGCTAAGTTTGCTAATGGTGTGGCAATGGTTGCTTCACTTTCATTGGCCATCTCCTACCCAACACTTGCAGCCGCCCCTCATATGTTTGTCAATGCATACAAGAATGTTCTTGCACTTGCTGTTGTTACAGAATATTCTTTCCCTGAGGCAGACAAGGTTAAGGAGTATCTTAAGGACCCGAGTAAATTTGCGGTTGCTGCTCCAGCTGCTGCTTCTGGTGGTGCCCCTGCTGCTGCCAAGGAGGAGGCAAAGAAGGAAGAGCCCGAAGACGATTCTGATGAAGACTATGGCGGCATGAATCTGTTTGGTGATGATTAG 963 0.433 MAVKPTKAEKKQNYDAKLCQLLDEFTQILVVNADNVGSNQLQSIRRGLRGDSIVLMGKNTMMKRSVRIHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLAIRPFSYGLVVLSVYDNGSVFSPEVLDLTDDDLVAKFANGVAMVASLSLAISYPTLAAAPHMFVNAYKNVLALAVVTEYSFPEADKVKEYLKDPSKFAVAAPAAASGGAPAAAKEEAKKEEPEDDSDEDYGGMNLFGDD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00581 320 PIRSF L10E 1 318 IPR030670 GO:0042254
Tsu07g00581 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Tsu07g00581 320 MobiDBLite consensus disorder prediction 302 320 - -
Tsu07g00581 320 Pfam 60s Acidic ribosomal protein 234 317 - -
Tsu07g00581 320 Gene3D - 6 209 IPR043141 -
Tsu07g00581 320 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Tsu07g00581 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 318 - -
Tsu07g00581 320 MobiDBLite consensus disorder prediction 282 320 - -
Tsu07g00581 320 CDD Ribosomal_P0_L10e 9 185 - -
Tsu07g00581 320 Pfam Ribosomal protein L10 7 108 IPR001790 -
Tsu07g00581 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 318 - -
Tsu07g00581 320 Gene3D - 114 185 IPR043164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00581 Tsu-Chr7 4590701 4592753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00581 1 318 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 80.503 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00581 K02941 - tcc:18585915 490.345