LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g00574	ATGGTAGAACACAAATATGAGATCGTAAAGAAGCTGCAAGACAGGAAACATATATGTGGAATGACAGGTGATGGTGTCAATGACGCTCCTGCATCAAAGAGAGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAGGTGCTTCTGATATTGTCCTTACTGAGCCTGGTCGGAGTATCATTATTAGTTCAGTGCTCACCAGCAGGGCAATTTTCCAAAGGATGAAGAACTATACTATCTATGCTGTGTCAATTACCATTCGTATTGTGTTTGGTTTCATGTTCATTGCCTTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTGTTGATTATTGCCATACTAAATGAATGTTGGTTATGA	372	0.4032	MVEHKYEIVKKLQDRKHICGMTGDGVNDAPASKRADIGIAVADATDAARGASDIVLTEPGRSIIISSVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNECWL	123

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g00574	123	SUPERFAMILY	HAD-like	3	116	IPR036412	-
	Tsu07g00574	123	Gene3D	-	3	59	IPR023214	-
	Tsu07g00574	123	TIGRFAM	ATPase_P-type: HAD ATPase, P-type, family IC	3	112	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Tsu07g00574	123	Gene3D	-	60	121	-	-
	Tsu07g00574	123	PANTHER	CALCIUM-TRANSPORTING ATPASE	3	120	-	-
	Tsu07g00574	123	PRINTS	H+-transporting ATPase (proton pump) signature	22	38	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Tsu07g00574	123	PRINTS	H+-transporting ATPase (proton pump) signature	53	78	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Tsu07g00574	123	PANTHER	ATPASE 5, PLASMA MEMBRANE-TYPE	3	120	-	-
	Tsu07g00574	123	PRINTS	P-type cation-transporting ATPase superfamily signature	45	57	-	-
	Tsu07g00574	123	PRINTS	P-type cation-transporting ATPase superfamily signature	22	41	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g00574	Tsu-Chr7	4518597	4519337	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g00574	3	120	Primary Pumps ATPases	AT5G57350	92.373	3.29e-70	224

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g00574	K01535		-	jre:109016418	205.682