Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00569 atgttgtttAACATCGGCCTCGCCGCATATATTATTGGAAACATGACAAATCTGGTTGTACATAGCTCTGTCCGAACCTTTGCCATGAGGGATGCCTTCAACAAGATATTGCAATATGCGAGCAAAAATGGACTCCAACAAGGTTTAAAGGACCAAATTGTGGCACATACACAACTGAAGTTCAAGACAGCAGAGTTACAGCAAGAAGAAGTGCTACAGAACCTACCTAAAGCAATTAGAGCCGGTATTGCTCAGTATCTTTTCCACGATGTGGttgaaaaatcatatttatttaaaggATTCTCAGATGATTTTATATCCCAGCTGGTATCAGATATGAAAGCAGAATACTACCCATCAAAGGTTGACATTATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTATCTGGATCGGTGGATGTGTTGACATACAAGAATGGGTCTGAACAGtttttgttcAAACTTGACCCTGGAAGCATGACAGGAGAAAAAGGTGTGATGTTTAATATCCCACAACCTTATACAGTGAGAAGTAGAAGACTCTCCCAGGTTATACGAATCAACCATCATCATTTCAAGCAGATGGTGAAACCATATAGTGAAGATGGGAAGGCAATCCATCAGCAACTTTTACTCAGAGTAATTCCAATTGCTATGCCAACTGTTTTGTCTGTTACTATGGCTATTGGTTCTCATAGGCTTTCTCAGCAAGGTGCAATTACAAAGAGAATGACAGCTATTGAGGAAATGGCAGGCATGGATGTTCTCTGCAGTGACAAAACCGGAACTCTGACCTTAAATAAGTTGTCTGTTGATAAAAACTTGATTGAGGTTTTTGCTAAGGGTGTAGAGAAGGATTATGTTATCCTTCTTGTAGCAAGGGCTTCTAGGACTAAGAATCAAGATGCCATTGATGCTGCAATTGTTGGGATGCTTGATGATCCAAAGGagGCACGAGCTAGTAGAACTGCTTTAACTTACATTGACTCTGATGGAAATTGCCATCGATCTAGCAAAGGTGCTCCTGAAcagATATTGAACCTCTGCAACTGCAAAGAGAATGTCAGGAAAAAAGCTCATTCAGTAATTGACAAGTTCGCCGAGCGTGGACTCCGTTTTTGGGTGTTGCTAGACAGGATAtacctgagaaaaacaaagatagCCCTGGTGCACCATGGCAGTGATCAACTTGCCATTGCCAAGGAAACTGGCCGAAGGCTTGGAATGAGAACAAACATGTATCCATCTTATTCATTGCTCGGTCAAAGCAAGGATGCTGCTGTTCCAGTTGATGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTGTATCCTGAACACAAATATGAGATCGTAAAGAAGCTGCAAGACAGGAAACATATATGTGGAATGACAGGTGATGGTGTCAATGACGCTCCTGCATCAAAGAGAGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAGGTGCTTCTGATATTGTCCTTACTGAGCCTGGCTACCGTGTGAATACGGAAGATAATCCGAATTACTTTTGTGCATTGGTTCCACCTCCAAATGGAGTCAGAAAGTCTGGCTTATGGGAGAAGATGTCAGATTTTGTTGAAAGTCTTGGCCCTGATCCAAACAAGGATGTTCGTGCTTCTGCCGATTCTCCAGCAGATTCTTCTCCCTTTGTGAAAACACTGGAGTTAGATAATGGTGTTCAGCAGGATAGCCATGAATTCTTGACATTGCTTCTGTCATTGCTTGAGCGTTGTCTGAGTCATTCCAAAGTTTCCGAGGCAAGAACAATAGTTCAAGATCTTTTCCGTGGAAGTGCGTCTTATGTGACAACGTATGAATCATTGAATATAAGAAATTTGTTAGCTAATAATACGCATCACAATGTGGAAGAGATTCTGAAGCTTCTTCCAAAACGGAAGATTTCTATGAATTGGAGTTAA 1965 0.4036 MLFNIGLAAYIIGNMTNLVVHSSVRTFAMRDAFNKILQYASKNGLQQGLKDQIVAHTQLKFKTAELQQEEVLQNLPKAIRAGIAQYLFHDVVEKSYLFKGFSDDFISQLVSDMKAEYYPSKVDIILQNEMPAYFYILVSGSVDVLTYKNGSEQFLFKLDPGSMTGEKGVMFNIPQPYTVRSRRLSQVIRINHHHFKQMVKPYSEDGKAIHQQLLLRVIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDYVILLVARASRTKNQDAIDAAIVGMLDDPKEARASRTALTYIDSDGNCHRSSKGAPEQILNLCNCKENVRKKAHSVIDKFAERGLRFWVLLDRIYLRKTKIALVHHGSDQLAIAKETGRRLGMRTNMYPSYSLLGQSKDAAVPVDELIEKADGFAGVYPEHKYEIVKKLQDRKHICGMTGDGVNDAPASKRADIGIAVADATDAARGASDIVLTEPGYRVNTEDNPNYFCALVPPPNGVRKSGLWEKMSDFVESLGPDPNKDVRASADSPADSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVSEARTIVQDLFRGSASYVTTYESLNIRNLLANNTHHNVEEILKLLPKRKISMNWS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00569 654 Gene3D - 398 505 IPR023214 -
Tsu07g00569 654 PANTHER CALCIUM-TRANSPORTING ATPASE 397 509 - -
Tsu07g00569 654 PANTHER CALCIUM-TRANSPORTING ATPASE 212 376 - -
Tsu07g00569 654 PRINTS P-type cation-transporting ATPase superfamily signature 491 503 - -
Tsu07g00569 654 PRINTS P-type cation-transporting ATPase superfamily signature 468 487 - -
Tsu07g00569 654 PRINTS P-type cation-transporting ATPase superfamily signature 159 173 - -
Tsu07g00569 654 SUPERFAMILY HAD-like 256 506 IPR036412 -
Tsu07g00569 654 Gene3D - 197 273 - -
Tsu07g00569 654 SUPERFAMILY Cysteine proteinases 565 622 IPR038765 -
Tsu07g00569 654 SUPERFAMILY Calcium ATPase, transmembrane domain M 213 254 IPR023298 -
Tsu07g00569 654 Pfam haloacid dehalogenase-like hydrolase 256 482 - -
Tsu07g00569 654 PANTHER PLASMA MEMBRANE ATPASE 397 509 - -
Tsu07g00569 654 PANTHER PLASMA MEMBRANE ATPASE 212 376 - -
Tsu07g00569 654 ProSitePatterns E1-E2 ATPases phosphorylation site. 262 268 IPR018303 -
Tsu07g00569 654 SMART cnmp_10 97 214 IPR000595 -
Tsu07g00569 654 SUPERFAMILY cAMP-binding domain-like 26 213 IPR018490 -
Tsu07g00569 654 Gene3D Jelly Rolls 61 196 IPR014710 -
Tsu07g00569 654 Pfam Cyclic nucleotide-binding domain 119 200 IPR000595 -
Tsu07g00569 654 CDD CAP_ED 97 210 IPR000595 -
Tsu07g00569 654 Gene3D - 274 379 IPR023299 GO:0000166
Tsu07g00569 654 ProSiteProfiles cAMP/cGMP binding motif profile. 97 216 IPR000595 -
Tsu07g00569 654 Gene3D Cysteine proteinases 510 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00569 Tsu-Chr7 4478286 4484840 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00569 213 509 Primary Pumps ATPases AT2G24520 69.253 7.75e-151 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00569 K01535 - gmx:100785442 439.499