Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00564 ATGGAGATGTTTATGAGAAGGGAAAAGTTTAGTGTGcgtgttattgttgttgttatcaTGTTCTTTAACATGTTTGTAGTGTGTTCTGTGAGTGGAATTGGTGTTAACTGGGGAACACAGTGCACACATCTTTTGTCACCAAACACAGTGGTGAAAATGTTGAAAGATAATGGGATTCAGAAGGTGAAGTTGTTTGATGCTGACCCAAATATCTTAGATGCTCTTAAAAAGTCTGGTATTCAAGTCATGGTAGGGATTCCAAATGACATGCTTTATACACTTGCTAATAGTCTTCCAGCTGCAGAAAAATGGGTTTCTAAGAATGTTTCTGCTCATGTTTCTTCTGGAGGTGTGGATATAAGGTATGTTGCAGTGGGGAATGAACCATTCCTGTCAACATACAATGGAACCTTTGAAGCCACAACACTTCCAGCTCTTCAAAACATCCAAGCAGCTCTCACAAAAGCTGGTCTGAGCAGCCGTGTCAAAGTCACTGTCCCTTTAAATGCTGATGTATATCTAAGCTCATCACAAAAGCCATCCGACGGCGATTTCAGGCCGGATATCACCAATGTCATGCTGGAGATAGTCAAGTTCTTGAGCGACAATGGAGCTCCATTTACCGTCAACATCTATCCTTTTATCAGCCTCTACTTGGATCCCAGTTTCCCCGCTGATTACGCCTTTTTCAACGGCTATCAGCCTGCCATAGTTGACAATGGAAAGAGCTACGACAACGTGTTAGATGCTAACCACGATACTTTAGTATGGGCACTGCAGAAACACGGGTTTGGAAACTTGCCTATAATTGTTGGGGAAATCGGTTGGCCAACCGATGGAGACAGAAATGCAAATCTGCCAAACGCGCAACGATTTAACCAAGGTTTTATGGCGAGGTATGTTTCCGGAAAGGGGACACCGATGAGGCCAGGTCCTTTAGACGCGTACTTGTTTAGTTTCATTGATGAAGATAATAAGAGCATTCAGCCCGGGAACTTCGAACGTCATTGGGGGTTGTTTTACTTAGATGGACAGCCCAAATACAACCTTAATCTCGGAACCGGCCGCGCCAACGGATTGATAGCAGCCAGTGGCGTTGATCATTTGGAGAAAAAGTGGTGTGTTTTGAAGCCTTCAGCAAACCTCAATAATGATCAAGTGGCACCAAGTGTTGCTTATGCTTGTCAAAATGCTGATTGTACTAGTCTTGGATACGGAACTTCATGCGGTAATTTGGATGTGAAAGGAAACATCTCTTATGCATTTAATAGTTATTACCAAGTTAATGACCAGATGGATAGTGCATGCAAATTCCCTGGACTGTCCATGATTACTGATAAGGATCCTTCATTTGGAACTTGCAAATTCAGAATCATGATACAGACAGATTCTGCTGAGCTGAATGGTATGGTTTGGTCAATAACAACTTTGTCCCTTGCTTTGGTTTTTTCACTATTGTGTAATGTTTCACTTTGA 1476 0.418 MEMFMRREKFSVRVIVVVIMFFNMFVVCSVSGIGVNWGTQCTHLLSPNTVVKMLKDNGIQKVKLFDADPNILDALKKSGIQVMVGIPNDMLYTLANSLPAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGTFEATTLPALQNIQAALTKAGLSSRVKVTVPLNADVYLSSSQKPSDGDFRPDITNVMLEIVKFLSDNGAPFTVNIYPFISLYLDPSFPADYAFFNGYQPAIVDNGKSYDNVLDANHDTLVWALQKHGFGNLPIIVGEIGWPTDGDRNANLPNAQRFNQGFMARYVSGKGTPMRPGPLDAYLFSFIDEDNKSIQPGNFERHWGLFYLDGQPKYNLNLGTGRANGLIAASGVDHLEKKWCVLKPSANLNNDQVAPSVAYACQNADCTSLGYGTSCGNLDVKGNISYAFNSYYQVNDQMDSACKFPGLSMITDKDPSFGTCKFRIMIQTDSAELNGMVWSITTLSLALVFSLLCNVSL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00564 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 20 465 IPR044965 GO:0004553|GO:0005975
Tsu07g00564 491 SUPERFAMILY (Trans)glycosidases 33 351 IPR017853 -
Tsu07g00564 491 Pfam X8 domain 372 442 IPR012946 -
Tsu07g00564 491 Pfam Glycosyl hydrolases family 17 33 351 IPR000490 GO:0004553|GO:0005975
Tsu07g00564 491 ProSitePatterns Glycosyl hydrolases family 17 signature. 267 280 IPR000490 GO:0004553|GO:0005975
Tsu07g00564 491 Gene3D Glycosidases 32 358 - -
Tsu07g00564 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 20 465 - -
Tsu07g00564 491 SMART X8_cls 372 456 IPR012946 -
Tsu07g00564 491 Gene3D - 368 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00564 Tsu-Chr7 4422664 4425870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00564 12 487 Glycoside Hydrolase AT4G31140 66.597 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00564 K19893 - gmx:100796552 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00564 07 4422664 4425870 Tsu01g00997 01 9129405 9136053 PCT