Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00549 ATGGGAGGTATCAGCCTCGAGGAGATCAAGAATGAGAACGTTGATTTGGAACGAATTCCAGTAGAGGAAGTGTTTGAGCAGCTAAAATGTTCAAAAGCTGGTTTATCCTCCGACGAAGGAGCCAACCGTCTTCAAGTTTTTGGTCCAAACAAATTggaagagaaaagagagagcAAATTTCTAAAGTTTTTAGGATTTATGTGGAACCCTTTATCATGGGTTATGGAAGCTGCTGCTATTATGGCCATTGCTTTGGCTAATGGAAGTGGAAGACCTCCTGATTGGCAGGATTTTGTTGGTATTATTTCTCTCTTGGTTATCAACTCTACTATCAGTttcattgaagaaaataatgCTGGTAATGCTGCTGCTGCTCTTATGGCTGGTTTGGCTCCCAAGACAAGGGTTCTAAGAGATGGTCGATGGAACGAAGAAGATGCTGCTATTTTGGTCCCAGGTGACATAATCAGCATTAAATTAGGAGATATCATTCCTGCTGATGCTCGTCTCCTTGAGGGTGATGCTTTGAGTGTTGATCAGTCTGCTTTAACCGGAGAATCTCTTCCGGCTACAAAGAATCCCTCAGATGAAGTGTTTTCTGGTTCAACTGTTAAGAAAGGTGAGATTGAAGCAGTTGTTATTGCTACTGGAGTGCACACATTTTTCGGTAAAGCTGCTCACCTTGTTGACAGCACCAACCAAGTTGGTCACTTTCAGAAAGTCCTAACAGCAATTGGTAATTTTTGCATTTGCTCAATTGCTGTTGGAATATTGATTGAGCTCGTTGTCATGTATCCCATACAACACCGGAAGTATAGAGACGGAATTGACAATCTTTTGGTTCTATTGATCGGAGGAATTCCAATTGCTATGCCTACTGTTTTGTCTGTTACTATGGCTATTGGTTCTCACAGGCTTTCTCAGCAAGGTGATCAGCTTGCCATTGCCAAGGAAACTGGCCGAAGGCTTGGAATGGGAACAAACATGTATCCATCTTCGTCATTGCTCGGTCAAAGCAAGGATGCTGCTGTTGCAGCTCTTCCAGTTGATGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTGTTTCCTGAACACAAATATGAGATCGTAAAGAAGCTGCAAGATAGGAAACATATATGTGGAATGACAGGTGATGGTGTCAATGACGCTCCTGCATTAAAGAGAGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAGGTGCTTCTGATATTGTCCTTACTGAGCCTGGTCTGAGTGTCATTATTAGCGCAGTGCTCACAAGCAGGGCAATTTTCCAAAGGATGAAGAACTATACTATCTATGCTGTGTCAATTACCATTCGTATTGTGTTTGGTTTCATGTTCATTGCCTTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTGTTGATTATCGCCATACTAAATGATGGTACCATTATGACAATATCAAAGGATAGAGTGGTACCATCTCCACAACCAGACAGTTGGAAACTGAGAGAGATATTTGCAACTGGTGTTGTGCTAGGTAGCTACATGGCACTAATGACAGTAGTGTTTTTCTGGCTCATGAAGGATACCGATTTCTTCTCGGACAAGTTTGGTGTGAGGTCTATCAGACACAGCCCTGACGAAATGATGGCAGCCCTCTACCTACAAGTCAGTATTATAAGCCAGGCACTAATTTTTGTCACCAGGTCTCGTAGCTGGTCCTTTGTTGAAAGACCTGGTCTTCTCCTATTGGGTGCTTTTATGATTGCTCAGCTGGTGGCAACTTTTATAGCAGTATATGCTAATTGGAGCTTCGCGAGAATTAAGGGAATGGGATGGGGTTGGGCTGGTGTAATATGGGTGTACAGTATAGTGACATATATCCCTCTTGATATACTCAAATTCGTAATCCGCTATGTTCTAAGTGGCAAAGCTTGGGATAATCTTTTGGAGAACAAGACTGCCTTCACAACGAAGAAAGACTATGgcaaagaagagagagaagcacAATGGGCCACTGCTCAGAGAACTCTTCATGGTCTTCAGTCACCTGACACAACCAACCTTTTCAATGACAAGAATAGCTACAGGGAACTTTCTGAGATTGCTGAGCAAGCCAAGAGACGCGCTGAAGTTGCACGGCTTAGGGAGCTTCATACTCTAAAGGGTCACGTTGAATCAGTCGTGAAGCTTAAGGGACTTGACATTGACACTATGCAACAACATTATACTGTTTAA 2244 0.4176 MGGISLEEIKNENVDLERIPVEEVFEQLKCSKAGLSSDEGANRLQVFGPNKLEEKRESKFLKFLGFMWNPLSWVMEAAAIMAIALANGSGRPPDWQDFVGIISLLVINSTISFIEENNAGNAAAALMAGLAPKTRVLRDGRWNEEDAAILVPGDIISIKLGDIIPADARLLEGDALSVDQSALTGESLPATKNPSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDAAVAALPVDELIEKADGFAGVFPEHKYEIVKKLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVVPSPQPDSWKLREIFATGVVLGSYMALMTVVFFWLMKDTDFFSDKFGVRSIRHSPDEMMAALYLQVSIISQALIFVTRSRSWSFVERPGLLLLGAFMIAQLVATFIAVYANWSFARIKGMGWGWAGVIWVYSIVTYIPLDILKFVIRYVLSGKAWDNLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQSPDTTNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTMQQHYTV 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00549 747 Gene3D - 94 309 - -
Tsu07g00549 747 PANTHER PLASMA MEMBRANE ATPASE 310 727 - -
Tsu07g00549 747 PANTHER PLASMA MEMBRANE ATPASE 1 310 - -
Tsu07g00549 747 Gene3D - 696 747 - -
Tsu07g00549 747 Gene3D - 132 216 - -
Tsu07g00549 747 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 319 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g00549 747 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 359 474 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g00549 747 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Tsu07g00549 747 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Tsu07g00549 747 PANTHER CALCIUM-TRANSPORTING ATPASE 310 727 - -
Tsu07g00549 747 PANTHER CALCIUM-TRANSPORTING ATPASE 1 310 - -
Tsu07g00549 747 Pfam haloacid dehalogenase-like hydrolase 340 398 - -
Tsu07g00549 747 Pfam E1-E2 ATPase 131 308 - -
Tsu07g00549 747 PRINTS H+-transporting ATPase (proton pump) signature 356 372 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g00549 747 PRINTS H+-transporting ATPase (proton pump) signature 415 440 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g00549 747 PRINTS H+-transporting ATPase (proton pump) signature 384 400 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g00549 747 PRINTS H+-transporting ATPase (proton pump) signature 556 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu07g00549 747 Gene3D - 422 611 - -
Tsu07g00549 747 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 643 IPR023298 -
Tsu07g00549 747 Coils Coil 698 718 - -
Tsu07g00549 747 SUPERFAMILY HAD-like 310 430 IPR036412 -
Tsu07g00549 747 Gene3D - 310 421 IPR023214 -
Tsu07g00549 747 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00549 Tsu-Chr7 4294118 4300535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00549 310 747 Primary Pumps ATPases AT2G24520 86.758 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00549 K01535 - gmx:100785442 813.913