Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00544 ATGGATGAATATTCTGGTAAAAGAGCCGTTGATGGGGTGTTAGTCCCTAGAAAGGGGATGGGCAGTATGTTAAAAGATACTGCCAATACTAGAGATCGAAATGGTCAAGTATGTAGCCGCCTTGGTTGCAGCAGCAAAGTTAACTCTTCTAAAGGTTCTCAAATTGGTTCCTCTGAAAAGGGTAAATCGTTGAGGCCTTCATTTCGGTTCTCATCAAACGGTAAGGAAACAATTGGCAGCTCCTCTAAAAATTTCTCCGGGAGTAGTAACCCAGGAAAACCTCATAGAAAGCCTCAGAAAACATTATTATCTCATGTAGAGACTGATTCATCTGAAACTAGTAGCGTACAAGAAGAACCAGAAGTTTCAAAGCTCGTACCTCAACCTGAAAAAAATCAGAAGGGACGTCAAGCTGAAGGGGAAAACACGGAGTCTGGTAATGGCATGCAGACGGAAGTAGGGAGTTCTAGTTTAGCATCTAATACAAGATCAAGGAGGAATTTTCATCCAAAACCTGGATTACGTAGTCAAGAAATTCAAAGCACCGGTCCAGGGGCACGTGCTGGTACCAGTAGGTATGGATTAAGGAACCTCAAATGCAACTCCATTTCTGATGTCATCCCGGCTGGCTGTACACCATCAGATTCAAACCTTAACAAAAGGAAGGATGCGGTAAAAAAGAGAAATTGTGAAGGCGAAAGTAGTTCTACAGctaaagggaaaaaaataaatgggccCTCGGCAGAAGGACGGAATACTGTTTCCAGAAATGGCATATCTATCTCTGATTCAAGAATATCAAGAAATACCTCTAATAGGGACAGACCAGACAGCAACATAACGTCTGTTAGAACACGAAGATCTATTGGTGGTCATGCTAGGGGAAGGCTTTCTGGCCAAGGAAGTGCTAATCCTGTGTCATCAAATCAGTCCCTTATCATGGTACCTTCCTTTTCTCATTCTGGCAATCTTAATGGTCCCGGTGCACAACATCATAATTCGCTGGAGACTCCTTCAAGTCCAAGCTCTTACAGTGGAGCAGGTACTAGCAGCGAGGAGTTATACGGTGTTATGCCAGGGTCTCCTGCAGAATATGGCCTTACTCATTCTCTAATAAACCGGGATAACTTTCGACGACGCTATAACATGGATGGTATTGCAGagGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTAACACACGAGCAAATTCTGTTGCTGGAGTCCAACTTGTTCCTTACTGGATTAAACTTCTACGATCAGCACAGAGAAATGCGATTGGACATTGATAATATGTCATATGAGGAACTGCTGGCTCTGGAAGAGAGGATGGGTACTGTGAGCACAGCTGTAACCGAGGAAGATCTATCAGAATGCCTAAAGAGAAGTTCCTTTCAATCCTCACCCTCAAACAATGCATCTAAATGTTGCAATGAGAATAAGGATGATATCAAATGCAGCATCTGCCagGAGGAATATGTGGCAGAGGATGAAGTGGGGAGTCTACTATGCGAACACAAGTATCACGTGGTTTGCATACAGCAGTGGCTACGACTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACAGTCAAGTTCATCGTCGGCACAGTAA 1629 0.4297 MDEYSGKRAVDGVLVPRKGMGSMLKDTANTRDRNGQVCSRLGCSSKVNSSKGSQIGSSEKGKSLRPSFRFSSNGKETIGSSSKNFSGSSNPGKPHRKPQKTLLSHVETDSSETSSVQEEPEVSKLVPQPEKNQKGRQAEGENTESGNGMQTEVGSSSLASNTRSRRNFHPKPGLRSQEIQSTGPGARAGTSRYGLRNLKCNSISDVIPAGCTPSDSNLNKRKDAVKKRNCEGESSSTAKGKKINGPSAEGRNTVSRNGISISDSRISRNTSNRDRPDSNITSVRTRRSIGGHARGRLSGQGSANPVSSNQSLIMVPSFSHSGNLNGPGAQHHNSLETPSSPSSYSGAGTSSEELYGVMPGSPAEYGLTHSLINRDNFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHREMRLDIDNMSYEELLALEERMGTVSTAVTEEDLSECLKRSSFQSSPSNNASKCCNENKDDIKCSICQEEYVAEDEVGSLLCEHKYHVVCIQQWLRLKNWCPICKASVAQSSSSSAQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00544 542 MobiDBLite consensus disorder prediction 236 286 - -
Tsu07g00544 542 MobiDBLite consensus disorder prediction 300 350 - -
Tsu07g00544 542 MobiDBLite consensus disorder prediction 139 167 - -
Tsu07g00544 542 CDD RING-H2_PA-TM-RING 489 530 - -
Tsu07g00544 542 ProSiteProfiles Zinc finger RING-type profile. 489 530 IPR001841 -
Tsu07g00544 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 534 - -
Tsu07g00544 542 Coils Coil 393 413 - -
Tsu07g00544 542 MobiDBLite consensus disorder prediction 219 235 - -
Tsu07g00544 542 MobiDBLite consensus disorder prediction 104 121 - -
Tsu07g00544 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 534 IPR045191 GO:0061630
Tsu07g00544 542 MobiDBLite consensus disorder prediction 27 95 - -
Tsu07g00544 542 MobiDBLite consensus disorder prediction 1 192 - -
Tsu07g00544 542 SUPERFAMILY RING/U-box 482 535 - -
Tsu07g00544 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 536 IPR013083 -
Tsu07g00544 542 MobiDBLite consensus disorder prediction 205 352 - -
Tsu07g00544 542 Pfam Ring finger domain 488 530 IPR001841 -
Tsu07g00544 542 SMART ring_2 489 529 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00544 Tsu-Chr7 4242892 4246724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00544 386 530 C3H Transcription Factor Family AT2G15530 45.205 1.04e-32 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00544 - - gmx:100787213 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00544 07 4242892 4246724 Tsu07g00544 07 4242892 4246724 ECH
Tsu01g00785 01 7029254 7033264 Tsu07g00544 07 4242892 4246724 PCT