Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00527 ATGCAACAGAGACTCAAgctgcaacaacaacaacaagcaCTCATGCAGCAAGCTTTGCTTCAGCAACAGCAGATGTACCATCACCCTGGCATGCTCGCCGCTGCCGCTATGACTCAGATGGAGCCTGTACCAAGTGGAAATCTGCCTCCTGGTTTTGATGCTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACTGATAAACTTCTTGCGGAAGTTTTTCAGAGTGCTGGCCCTCTTGCTGGGTGCAAGCtcataagaaaagaaaagTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCCGCAGCGCTTGCAATAATGACATTGCATGGAAGACAACTATATGGTCAAGCACTCAAGGTGAATTGGGCATATGCCAATACCAGTAGGGAGGATACCTCAGGGCACTTCAATGTATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATACTACTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATCAATGATATGACGGGTAAATGGCTGGGAAATAGGCAAATAAGATGCAATTGGGCAACTAAAGGAGCTGGTGGCAGCTCAAATGAAGAGAAAATCAATGACAGCCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATGGCAATGAGGATGCTCCTGAAAACAATCCTTCATACACAACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAATTCCATGCATTGGGAGCTGGGGTACTTGAGGAGGTCCGAATTCAGAGGGataagggttttggatttgtCAGATACAATACTCACGAGGAAGCAGCATTGGCCATTCAGATGGCTAATGGGAGACCAGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGGACAGCGTCAAATCCATTACCTCCTCCTGCTGCACAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATTCTTCGCCCGCTGAGTTGTTGGCTTATCAGCGCCAGTTGGCCTTGAGTCAGGCCGCTGTATCTGGCCTTTCAGGACAAGCTCTTCTCCAAATGTCTGGACAGCATGGCCTAGCTCCTGCATCAATGGGTATAAACTCTGCAGCATCTCAAGCCATGTATGATGGATATACTGGTAATTCGTCAAGACAGCAGCTTATGTACTATCGTTGA 1320 0.4424 MQQRLKLQQQQQALMQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANTSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNGNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRIQRDKGFGFVRYNTHEEAALAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYTGNSSRQQLMYYR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00527 439 MobiDBLite consensus disorder prediction 240 263 - -
Tsu07g00527 439 SUPERFAMILY RNA-binding domain, RBD 251 343 IPR035979 GO:0003676
Tsu07g00527 439 CDD RRM3_TIA1_like 265 339 - -
Tsu07g00527 439 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 9 436 - -
Tsu07g00527 439 MobiDBLite consensus disorder prediction 330 354 - -
Tsu07g00527 439 Gene3D - 1 141 IPR012677 -
Tsu07g00527 439 Gene3D - 243 343 IPR012677 -
Tsu07g00527 439 SMART rrm1_1 266 335 IPR000504 GO:0003723
Tsu07g00527 439 SMART rrm1_1 144 217 IPR000504 GO:0003723
Tsu07g00527 439 SMART rrm1_1 59 128 IPR000504 GO:0003723
Tsu07g00527 439 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 436 - -
Tsu07g00527 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 339 IPR000504 GO:0003723
Tsu07g00527 439 Gene3D - 142 222 IPR012677 -
Tsu07g00527 439 SUPERFAMILY RNA-binding domain, RBD 137 250 IPR035979 GO:0003676
Tsu07g00527 439 SMART rrm2_1 144 217 IPR003954 GO:0003676
Tsu07g00527 439 SMART rrm2_1 266 335 IPR003954 GO:0003676
Tsu07g00527 439 SUPERFAMILY RNA-binding domain, RBD 42 136 IPR035979 GO:0003676
Tsu07g00527 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Tsu07g00527 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 333 IPR000504 GO:0003723
Tsu07g00527 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 215 IPR000504 GO:0003723
Tsu07g00527 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Tsu07g00527 439 CDD RRM2_PUB1 144 218 - -
Tsu07g00527 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 132 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00527 Tsu-Chr7 4121860 4129392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00527 47 339 Eukaryotic Initiation Factors Gene Family AT1G22760 25.329 3.82e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00527 K13201 - gmx:100790916 803.897