Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00522 ATGGAGTGGAATGTAGCACaggaacaacaacatcaacaacaacggcGAACAGTTCCGCAACAACATGCTGTTTCGGTAAGGTCTAAACCGCCCCTAGGCAGATATAAGTGCAATGTCGATGCTTCATTCTCTATAAGGCGCAATAGGACAGGGATTGGTTTGCTTCATGCATTAAAGTGGGTCCAAGAGCTGCATTTGAAAGATGTAGATTTTGAACTTGATTTTATGAATGTTGTTGCAAAGTTTCATAGCAAATCAAAAGACATTTATGGGTTAGGAGATGTCATAAAAGATTGTCAATACATTCATAACTCTTATTTTAGAAACTCTCGGGTTGAGTTTGTTAGAAGACAAGTCAATGAGGCCGCTCATGTTTTAGCAAGTGTGGCCCCATCTCTAGCTAGTTTCCACATTTTCATTGATGTACCTCTTTTCGTTCAACccaataaacaaacaaacactgAACATACGAAGCTGCCGCTGCACCAGCTAGGGTTTTTCAATCTTCAGTTAGGTTTTTCGTTCGCTGAAACCATGACTCGCGTCTATATTGGAAATCTTGATTCACGTATTTCTGAAAGGGATCTTGAAGAtgattttcatgtttttggAGTTATACGAAGTGTTTGGGTTGCAAGGAGGCCACCTGGTTATGCTTTCATTGATTTTGATGACCGCAGAGATGCCCTCGATGCTATCCGTGAATTAGATGGTAAAAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAAAAGTGGGAGTGGAGGGGGAGGTAGAGGTGGTGGTGGCGGTGGTCGTGGTCGTTCTGGTGGGGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCACGGGAGTGTCATTCCTCTCGTGGTGGTTCTGGAAGACGTCGGAGCCGTAGTCCACCTCGATTGCGCAGGAGCCCAAGTTATGGGCGAAGGTGA 957 0.4148 MEWNVAQEQQHQQQRRTVPQQHAVSVRSKPPLGRYKCNVDASFSIRRNRTGIGLLHALKWVQELHLKDVDFELDFMNVVAKFHSKSKDIYGLGDVIKDCQYIHNSYFRNSRVEFVRRQVNEAAHVLASVAPSLASFHIFIDVPLFVQPNKQTNTEHTKLPLHQLGFFNLQLGFSFAETMTRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDGKNGWRVELSHNSKSGSGGGGRGGGGGGRGRSGGGGSDLKCYECGEPGHFARECHSSRGGSGRRRSRSPPRLRRSPSYGRR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00522 318 Gene3D - 277 314 - -
Tsu07g00522 318 ProSiteProfiles Zinc finger CCHC-type profile. 277 291 IPR001878 GO:0003676|GO:0008270
Tsu07g00522 318 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1 170 315 - -
Tsu07g00522 318 SUPERFAMILY RNA-binding domain, RBD 178 274 IPR035979 GO:0003676
Tsu07g00522 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 251 IPR000504 GO:0003723
Tsu07g00522 318 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 170 315 - -
Tsu07g00522 318 CDD RNase_H_like 37 127 IPR044730 -
Tsu07g00522 318 Pfam Zinc knuckle 277 291 IPR001878 GO:0003676|GO:0008270
Tsu07g00522 318 MobiDBLite consensus disorder prediction 1 24 - -
Tsu07g00522 318 MobiDBLite consensus disorder prediction 298 318 - -
Tsu07g00522 318 CDD RRM_SRSF3_like 181 249 - -
Tsu07g00522 318 Gene3D - 175 276 IPR012677 -
Tsu07g00522 318 MobiDBLite consensus disorder prediction 287 318 - -
Tsu07g00522 318 Pfam Reverse transcriptase-like 53 128 IPR002156 GO:0003676|GO:0004523
Tsu07g00522 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 239 IPR000504 GO:0003723
Tsu07g00522 318 SUPERFAMILY Retrovirus zinc finger-like domains 268 296 IPR036875 GO:0003676|GO:0008270
Tsu07g00522 318 MobiDBLite consensus disorder prediction 1 26 - -
Tsu07g00522 318 SMART rrm1_1 181 247 IPR000504 GO:0003723
Tsu07g00522 318 MobiDBLite consensus disorder prediction 244 275 - -
Tsu07g00522 318 SMART c2hcfinal6 277 293 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00522 Tsu-Chr7 4078729 4080952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00522 177 238 Eukaryotic Initiation Factors Gene Family AT2G36660 39.394 3.08e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00522 K12896 - twl:119992534 179.874