LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g00521	ATGGATTCCGGAGATGATATACACGATGCCAACGATATTGAGTCTCTCAATGAAGATATTGAGTCTCTCAACGATAACTACGACAactatgatgatgatgctgCAGCTGCTGATTACTTTGAcgatgacgatgatgatgatactCACCCTGCTAAGTCTCGTCGAATCGAGCAAAGTTTTACCATATTGAAAGAATCAGATATACGGCAACGGCAGGAAGATGATATCAGAAGAGTAGCAGCAGTTCCTTCCATACCGCATGGTGCTGCAAGCATCTTACTTTGTCATTATAACTGGAGCGTCAGTAGGGTTAATGATGCTTGGTTCGCTGATGAACATGAAGTTCGAAGAACAGTTGGTTTGTTGGAGAAGCCAGTTTACGACAATCCTGCTGATGCGAAAGAGCTCACTTGCGGCATATGTTTTGAAGCTTACCCTCTTTCTGAGATTGAAACGGCTTCTTGCGGTCATCCATTCTGTTTTTCTTGCTGGGGAGGATATATTGGGACTTCAATAAACGATGGTCCGGGATGCTTGCTGCTGAGATGTCCCGAATCCGCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCATCTGGTGAAGATAAAGACAAGTATGATCGTTACCTTCTCAGATCTTACATTGAAGACAATAAGAAAACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTTAATTTTGACCCCACTGGAACTGGAAAAGATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACCGAAGAGTCTCACCGTTCAGTGGATTGTGGCACCGTGTCAAAGTGGATTCTAAAAAACAGTTCAGAATCCGAAAATGTGACTTGGATACTTGCTAAAACAAAGCCATGTCCCGAGTGCAAGAGACCGATCGAAAAAAACCACGGGTGCATGCATATGACATGTAGTCAACCTTGTAGATTTGAATTTTGCTGGATATGCCTTGGTGCATGGAGAAAACATGGGGGTTCTTGCAATCGTTATGAATCAGGTGAACAAAATGAAActgaaaaaagaagagaaatggCAAAGAAATCACTGGAGAAGTACACACATTATTATAAGCGATGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTGTTGCTGATCTACAAGAGATGCAAAGTGTTCATATGAAGAATCTTGGTGACTCACAGCGCCAAACTGAGTTGGAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAGTGCAGGCGAGTATTGAAGTGGAcatatgcatatggatactatTTACCTGATAATGAGCAAGCTAAAAAGAAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCATTGTGCTGAAAAGGTCATTCAAGTATTCCTCAGTGACGATCCTCCATCTCCATCCGAAGAATTCAATGATTTTCGTAAAAAACTAACTGAATTGACCAATGTGACTAGAAACTACTTTGAGAATTTGGTTAAGGCATTAGAGAATGGTTTATGTGATGTGGATACCAATGGAATTATAACTGATGATCATTGA	1575	0.393	MDSGDDIHDANDIESLNEDIESLNDNYDNYDDDAAAADYFDDDDDDDTHPAKSRRIEQSFTILKESDIRQRQEDDIRRVAAVPSIPHGAASILLCHYNWSVSRVNDAWFADEHEVRRTVGLLEKPVYDNPADAKELTCGICFEAYPLSEIETASCGHPFCFSCWGGYIGTSINDGPGCLLLRCPESACGAAVDQDMINLLASGEDKDKYDRYLLRSYIEDNKKTKWCPAPGCEHAVNFDPTGTGKDYDVSCLCSYSFCWNCTEESHRSVDCGTVSKWILKNSSESENVTWILAKTKPCPECKRPIEKNHGCMHMTCSQPCRFEFCWICLGAWRKHGGSCNRYESGEQNETEKRREMAKKSLEKYTHYYKRWASNQSSRQKAVADLQEMQSVHMKNLGDSQRQTELELKFITEAWLQIVECRRVLKWTYAYGYYLPDNEQAKKKFFEYLQGEAESGLERLHHCAEKVIQVFLSDDPPSPSEEFNDFRKKLTELTNVTRNYFENLVKALENGLCDVDTNGIITDDH	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g00521	524	Coils	Coil	13	33	-	-
	Tsu07g00521	524	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	131	219	IPR013083	-
	Tsu07g00521	524	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	26	513	-	-
	Tsu07g00521	524	CDD	RING-HC_RBR_TRIAD1_like	138	188	-	-
	Tsu07g00521	524	Pfam	Ariadne domain	348	511	IPR045840	-
	Tsu07g00521	524	MobiDBLite	consensus disorder prediction	22	45	-	-
	Tsu07g00521	524	SUPERFAMILY	RING/U-box	290	341	-	-
	Tsu07g00521	524	MobiDBLite	consensus disorder prediction	22	52	-	-
	Tsu07g00521	524	ProSiteProfiles	Zinc finger RING-type profile.	138	182	IPR001841	-
	Tsu07g00521	524	Gene3D	-	269	514	-	-
	Tsu07g00521	524	SUPERFAMILY	RING/U-box	133	219	-	-
	Tsu07g00521	524	SMART	ibrneu5	284	339	IPR002867	-
	Tsu07g00521	524	SMART	ibrneu5	207	271	IPR002867	-
	Tsu07g00521	524	ProSiteProfiles	TRIAD supradomain profile.	134	343	IPR044066	-
	Tsu07g00521	524	SUPERFAMILY	RING/U-box	207	278	-	-
	Tsu07g00521	524	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	26	513	IPR031127	GO:0004842\|GO:0016567
	Tsu07g00521	524	Pfam	IBR domain, a half RING-finger domain	207	271	IPR002867	-
	Tsu07g00521	524	Pfam	IBR domain, a half RING-finger domain	288	339	IPR002867	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g00521	Tsu-Chr7	4074083	4075713	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g00521	17	517	ARIADNE family	AT1G65430	63.107	0.0	652

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g00521	K11968		-	gmx:100810427	791.571