Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00519 ATGGATTCCGAAGATGATATGCACAATGCCAATGATATTGAGTTTCTCGATGACGATTTCTACAGTGGTGGAACCGAAGATGGTCCCATGGATAACTACAGCGactatgatgatgatgctgCTGAAGATGATTCTGATCCTGCTGAGTCCCGTCGAACCGAGCAAAGTTTTACCATATTGAAAGAATCAGATATACGGCAACGGCAGGAAGATGATATCAGTAGATTAGCAGATTTTCTTTCCATATCGCATGTTGCTGCAAGCATTCTTCTTCGTCATTATAATTGGAGCGTCAGTAGGGTTAATGATGCTTGGTTTGCTGACGAAGGTGAAGTTCGAAAAACAGTTGGTTTGTTGGAGAAGCCGGTTTACGTGAATCCTGCTGATGCCGAAGAGCTTACTTGCGGCATATGTTTCGATGCTTACCCTCTTTCTGAGATTGAAACAGCTTCTTGCGGTCATCCGTTCTGTTTTTCATGCTGGGGAGGATATATTGGGACTTCAATTAACGATGGTCCGGGATGCTTGATGCTGAGATGTCCGGAACCCGATTGTAGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCATCTGGTGAAGATAAAGACAAGTATGATCGTTACCTTCTCAGATCTTACATTGAAGACAATAAGAAAACCAAGTGGTGTCCTGCTCCTGGTTGTGAGCATGCTGTTAATTTTGACGGTGGAACTGGTAAAAATTATGATGTAACTTGTCTCTGTTCGTATAGCTTTTGTTGGAATTGCAACGAAGAGGCTCACCGTCCGGTGGATTGTGGCACTGTGTCAGAGTGGATTCGAAAAAACAGTGCAGAATCCGAAAACACGAACTGGATACTTGCTTACACAAAGCCATGTCCCAAGTGCAAGAAACCGATCGAAAAAAACCAAGGGTGCAGCCACATGACATGTAAAACACCTTGTAACTTTGAATTTTGCTGGCTATGCCTTGGTGCATGGAGAGAACATAATGGTGCTTGCAATCGTTATGAATCAGCTGGACAAAATGAAActgaaaaaagaagagaaagggCAAAGAAATCAGTGGAGAAGTACACACATTATTATGAGCGATGGGCTAGCAACCATTCTTCAAGGGAAAAAGCTATTGTTGATCTACAACAGATGCAAACAGTTTATACTGAGAAGCTTCGTGGATCACAGTGTCGACTTGAGTCACAACTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAGTGCAGGCTAGTATTGAAGTGGAcatatgcatatggatactatTTACCCGATAATGAACAGACTAAAAAGCAATTATTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAGCTCCAAGTATTCCTCAATGACGATGTCGCCCCATCTAAAGAATTCAACAGTGACGATGTTGCCCCGTCTAAAGAATTCATTGATTTTCGTTCAAAACTAGTTAGATTGACCACTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGTGATGTGGATGGCGATGGAATAACCGATGATCATTGGTTTTGTGAGCAATGTACCTTTGCAAATGTCGTATCTGCCACCGGATGCCTGATGTGCAATGAACAACGTCCATGGAGTCGGTAA 1674 0.4074 MDSEDDMHNANDIEFLDDDFYSGGTEDGPMDNYSDYDDDAAEDDSDPAESRRTEQSFTILKESDIRQRQEDDISRLADFLSISHVAASILLRHYNWSVSRVNDAWFADEGEVRKTVGLLEKPVYVNPADAEELTCGICFDAYPLSEIETASCGHPFCFSCWGGYIGTSINDGPGCLMLRCPEPDCSAAVDQDMINLLASGEDKDKYDRYLLRSYIEDNKKTKWCPAPGCEHAVNFDGGTGKNYDVTCLCSYSFCWNCNEEAHRPVDCGTVSEWIRKNSAESENTNWILAYTKPCPKCKKPIEKNQGCSHMTCKTPCNFEFCWLCLGAWREHNGACNRYESAGQNETEKRRERAKKSVEKYTHYYERWASNHSSREKAIVDLQQMQTVYTEKLRGSQCRLESQLKFITEAWLQIVECRLVLKWTYAYGYYLPDNEQTKKQLFEYLQGEAESGLERLHQCAEKELQVFLNDDVAPSKEFNSDDVAPSKEFIDFRSKLVRLTTVTRNYFENLVRALENGLCDVDGDGITDDHWFCEQCTFANVVSATGCLMCNEQRPWSR 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00519 557 SUPERFAMILY RING/U-box 130 216 - -
Tsu07g00519 557 MobiDBLite consensus disorder prediction 1 15 - -
Tsu07g00519 557 ProSitePatterns Zinc finger RanBP2-type signature. 530 549 IPR001876 -
Tsu07g00519 557 Pfam Ariadne domain 344 472 IPR045840 -
Tsu07g00519 557 Pfam IBR domain, a half RING-finger domain 204 267 IPR002867 -
Tsu07g00519 557 Pfam IBR domain, a half RING-finger domain 285 332 IPR002867 -
Tsu07g00519 557 ProSiteProfiles TRIAD supradomain profile. 131 339 IPR044066 -
Tsu07g00519 557 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 528 - -
Tsu07g00519 557 ProSiteProfiles Zinc finger RanBP2 type profile. 526 555 IPR001876 -
Tsu07g00519 557 SUPERFAMILY RING/U-box 204 274 - -
Tsu07g00519 557 SMART ibrneu5 204 267 IPR002867 -
Tsu07g00519 557 SMART ibrneu5 275 335 IPR002867 -
Tsu07g00519 557 CDD RING-HC_RBR_TRIAD1_like 135 185 - -
Tsu07g00519 557 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Tsu07g00519 557 SUPERFAMILY Ran binding protein zinc finger-like 527 553 IPR036443 -
Tsu07g00519 557 Gene3D - 263 520 - -
Tsu07g00519 557 SUPERFAMILY RING/U-box 286 336 - -
Tsu07g00519 557 MobiDBLite consensus disorder prediction 1 54 - -
Tsu07g00519 557 Gene3D - 524 557 - -
Tsu07g00519 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 216 IPR013083 -
Tsu07g00519 557 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 528 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00519 Tsu-Chr7 4067129 4068802 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00519 17 553 ARIADNE family AT1G65430 60.000 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00519 K11968 - gmx:100810427 845.114