Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00518 ATGGATTCCGAAGATGATAAGCATGCCATCAATATTGAGACTCTCGAAGACTACTTCTACAAAGTTGTTGTCATGATGGGTAAGTACATCGGTGCTGCTGATGAGTATGGTCGAACCAAACAAAGTTATACCATAATGAAAGAATCAGATGTACGGCAATGGCAGAAAGATGATATCAGTAGAGTAGCAACAGTTCTTTCCATGTCGCATGTTGCTGCAAGCATCCTACTCTGTCATTATAATTGGAGCGTCAATTGGGTTATGGATGCTTGGTTTGCTGATGAATGTAAAGTTCGAAGATCAGTTGGTTTGTTGGAGAAGCCAGTTTACGAGAATCCTACTGATGCGAAAGAGCTTACTTGTGGCATCTGTTATGAAGCTTACCCTGTTTCTAAGATTGAAACTGCTTCTTGCGGTCATCCGTTCTGTTTTTCATGCTGGGGAGGATATATTGGGACTTCCATTAACGATGGTCCGGGATGCTTGATGCTGAGATGTCCCGAACCCGCTTGTGGTGCTGCTGTTGATCAAGACATGATTAATCTTTTAGCCTCTGGTGAAGATAAAGAAAATTATGATCGCTACCTTCTCAGATCATACATTTGA 606 0.4175 MDSEDDKHAINIETLEDYFYKVVVMMGKYIGAADEYGRTKQSYTIMKESDVRQWQKDDISRVATVLSMSHVAASILLCHYNWSVNWVMDAWFADECKVRRSVGLLEKPVYENPTDAKELTCGICYEAYPVSKIETASCGHPFCFSCWGGYIGTSINDGPGCLMLRCPEPACGAAVDQDMINLLASGEDKENYDRYLLRSYI 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00518 201 CDD RING-HC_RBR_TRIAD1_like 121 171 - -
Tsu07g00518 201 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 17 201 - -
Tsu07g00518 201 ProSiteProfiles Zinc finger RING-type profile. 121 165 IPR001841 -
Tsu07g00518 201 SUPERFAMILY RING/U-box 116 200 - -
Tsu07g00518 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 200 IPR013083 -
Tsu07g00518 201 ProSiteProfiles TRIAD supradomain profile. 117 201 IPR044066 -
Tsu07g00518 201 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 201 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00518 Tsu-Chr7 4061965 4062570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00518 36 201 ARIADNE family AT1G65430 59.639 3.87e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00518 K11968 - gmx:100810427 268.855