Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00517 ATGAAGAAGCTCAGTAACTCACAGCAACAATCTAAGTTGAAGCTTAAGTTCATAACTGATGCCTGGTTACAGATAGTTGAGTGCAGGCGGATATTGAAGTGGACATATGTGTATGGATACTATTTACCCGATAATGAACATGCTAAAAAGCAATTATTTGAGTACTTACAAGGTGAGGCAGAATCATGTTTGGAGAGACTTCATCATTGTGCTGAAAAGGAGATCCAAGTATTCCTCAGTGACGATGTCGCCCCATCTAAAGAATTCATTGATTTTCGTATGAAATTAGCTGACTTGACCAGTGTGACTAGAAACTACTTTAAGAATTTGGTTAGGGCATTAGAGAATGGTTTAAGTGATGTGGATAGCAATGGAGTAATAACTGATGATGATTGGTTCTGCGAGCAATATACCTTTGAAAATGTCATATCTTGCACCGGATGCCGGATGTGCAATTAA 459 0.3834 MKKLSNSQQQSKLKLKFITDAWLQIVECRRILKWTYVYGYYLPDNEHAKKQLFEYLQGEAESCLERLHHCAEKEIQVFLSDDVAPSKEFIDFRMKLADLTSVTRNYFKNLVRALENGLSDVDSNGVITDDDWFCEQYTFENVISCTGCRMCN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00517 152 Pfam Ariadne domain 8 118 IPR045840 -
Tsu07g00517 152 Gene3D - 1 121 - -
Tsu07g00517 152 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 129 - -
Tsu07g00517 152 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 129 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00517 Tsu-Chr7 4061306 4061764 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00517 1 126 C3H Transcription Factor Family AT2G31510 66.667 1.73e-54 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00517 K11968 - gmx:100810427 212.616