Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00514 ATGGGTTCCGGAGATGATATGCACGATGCCAACGATATTGAATCTCTCGATGACGATTTCTACAGTGGTGGAACCGAAGATGATCCCATGGATAACTACAGCGactatgatgatgatgctgCTGAAGATGATTCTGATCCTGCTGAGTCCCGTCGAACCGAGCAAAGTTTTACCATATTGAAAGAATCAGATATACGGCAACGGCAGGAAGATGATATCAGTAGATTAGCAGATTTTCTTTCCATATCGCATGTTGCTGCAAGCATTCTTCTTCGTCATTATAATTGGAGCGTCAGTAGGGTTAATGATGCTTGGTTTGCTGACGAAGGTGAAGTTCGAAAAACAGTTGGTTTGTTGGAGAAGCCAGTTTACGTGAATCCTGATGCGGACGAGCTTACTTGCGGCATCTGTTTTGATGTTTACCCTCTTTCTGAGATTGAAACGGCTTCTTGCGGTCATCCGTTCTGTTTTTTATGTTGGGGAGGATATATTGGGACTTCCATTAAGGATGGTCCGGGATGCTTGATGCTGAGATGTCCGGAACCCGGTTGTGGGGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCATCTGGTGAAGATAAAGGCAAGTATGATCGTTACCTTCTCAGATCTTACATTGAAGACAATAAGAAAACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTTAATTTTGACGGTGGAACTGGTAAAAATTATGATGTATCTTGTCTCTGTTCGTATAGCTTTTGTTGGAATTGCAACGAAGAGGCTCACCGTCCGGTGGATTGTGGCACCGTGTCAGAGTGGATTCAAAAAAACAGTGCAGAATCCGAAAACACGAACTGGATACTTGCTTACACAAAGCCATGTCCCGCGTGCAAGAAACCAATCGAAAAAAACCAAGGGTGCAGCCACATGACATGTAAAACACCTTGTAACTTTGAATTTTGCTGGCTATGCCTTGGTGCATGGAGAGAACATAATGGTGCTTGCAATCGTTATGAAGCAACTAAACAAAATGAAActgaaaaaataagagaaaggGCAAAGAATTACCTGCAGAAGTACACACATTATTATGAGCGATGGGCTGGCAACCATTCTTCAAGGCAAAAAGCTGTTGCTGATCTACAAGAGATGCAAAGTATTCATATGAAGAAGCTTGGTGACTCACAGCGCCAAACTGAGTTGGAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAGTGCAGGAGGGTATTGAAGTGGAcatatgcatatggatactatTTACCTGATAATGAGCAAGCTAAAAAGAAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCATTGTGCTGAAAAGGACATTCAAGTATTCCTCACTGACGATGTTGTTGCCCCATCTGAAGAATTCAATGGTTTTCGTACAAAACTAACTGACTTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTAAGTGATGTGGATAGCAATGGAGTAATAACTGATGATGATTGGTTTTGTGAGCGATGTACCTTTGCAAATGTCACATCTGCCTCCGTATGCCAGATGTGCCATCAAAAACGTCCATGGAGTTGGTAA 1644 0.4106 MGSGDDMHDANDIESLDDDFYSGGTEDDPMDNYSDYDDDAAEDDSDPAESRRTEQSFTILKESDIRQRQEDDISRLADFLSISHVAASILLRHYNWSVSRVNDAWFADEGEVRKTVGLLEKPVYVNPDADELTCGICFDVYPLSEIETASCGHPFCFLCWGGYIGTSIKDGPGCLMLRCPEPGCGAAVDQDMINLLASGEDKGKYDRYLLRSYIEDNKKTKWCPAPGCEHAVNFDGGTGKNYDVSCLCSYSFCWNCNEEAHRPVDCGTVSEWIQKNSAESENTNWILAYTKPCPACKKPIEKNQGCSHMTCKTPCNFEFCWLCLGAWREHNGACNRYEATKQNETEKIRERAKNYLQKYTHYYERWAGNHSSRQKAVADLQEMQSIHMKKLGDSQRQTELELKFITEAWLQIVECRRVLKWTYAYGYYLPDNEQAKKKFFEYLQGEAESGLERLHHCAEKDIQVFLTDDVVAPSEEFNGFRTKLTDLTSVTRNYFENLVRALENGLSDVDSNGVITDDDWFCERCTFANVTSASVCQMCHQKRPWSW 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00514 547 ProSitePatterns Zinc finger RanBP2-type signature. 520 539 IPR001876 -
Tsu07g00514 547 ProSiteProfiles TRIAD supradomain profile. 130 338 IPR044066 -
Tsu07g00514 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 215 IPR013083 -
Tsu07g00514 547 SMART zf_4 518 542 IPR001876 -
Tsu07g00514 547 MobiDBLite consensus disorder prediction 19 44 - -
Tsu07g00514 547 Gene3D - 262 509 - -
Tsu07g00514 547 CDD RING-HC_RBR_TRIAD1_like 134 184 - -
Tsu07g00514 547 Gene3D - 515 547 - -
Tsu07g00514 547 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 517 - -
Tsu07g00514 547 MobiDBLite consensus disorder prediction 1 56 - -
Tsu07g00514 547 Pfam Ariadne domain 343 506 IPR045840 -
Tsu07g00514 547 ProSiteProfiles Zinc finger RING-type profile. 134 178 IPR001841 -
Tsu07g00514 547 SUPERFAMILY RING/U-box 204 273 - -
Tsu07g00514 547 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 -
Tsu07g00514 547 Pfam IBR domain, a half RING-finger domain 284 331 IPR002867 -
Tsu07g00514 547 SUPERFAMILY Ran binding protein zinc finger-like 518 543 IPR036443 -
Tsu07g00514 547 SUPERFAMILY RING/U-box 129 215 - -
Tsu07g00514 547 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 517 IPR031127 GO:0004842|GO:0016567
Tsu07g00514 547 SUPERFAMILY RING/U-box 285 337 - -
Tsu07g00514 547 SMART ibrneu5 274 334 IPR002867 -
Tsu07g00514 547 SMART ibrneu5 203 266 IPR002867 -
Tsu07g00514 547 ProSiteProfiles Zinc finger RanBP2 type profile. 516 545 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00514 Tsu-Chr7 4043738 4045381 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00514 17 543 ARIADNE family AT1G65430 60.627 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00514 K11968 - gmx:100810427 843.958