Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00512 ATGGATTCCGGAGGTGATATGCACGATGCCAACGATATTGAGTATTACAGCgactatgatgatgatgatgctgcTGAAGATTACTTtgacgacgatgatgatgattctcACCCTGCTAAGTCTCGTCGAATCGAGCAAAGTTTTACCATATTGAAAGAATCAGATATACGGCAACGGCAGGAAGATGATATCAGTAGATTAGCAGATTTTCTTTCCATATCACATGTTGCTGCAAGCATTCTTCTTCGTCATTATAATTGGACCGTCAGTAGGGTTAGTGATGCTTGGTTTGCTGACGAAGGTGAAGTTCGAAGATCAGTTGGTTTGTTGGAGAATCCAGTTTACGTGAATCCTGCTGATGCCGAAGAGCTTACTTGCGGCATATGTTTCGATGTTTACCCTCTTTCTGAGATTGAAACAGCTTCTTGCGGTCATCCGTTCTGTTTTTCATGCTGGGGAGGATATATTGGGACTTCCATTAACGATGGTCCGGGATGCTTGATGTTGAGATGTCCTGAACCCGCTTGTGGGGCTGCTGTTGATCAAAATATGATTAATCTTTTAGCATCTGGTGAAGATAAAGAAAAGTATGATCGCTACCTTCTCAGATCTTACATTGAGTACAATAAGAAAACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTTAATTTTGACGCTGCTGGAACTGGAAAAGATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACGGAAGAGGCTCACCGTCCCGTGGATTGCGACACCGTGTCAAAGTGGATTCTAAAAAACAGTGCAGAATCCGAAAACACGAACTGGATACTTGCTTACACAAAGCCATGTCCCAAGTGCAAGAAACCGATCGAAAAAAACCATGGGTGCAACCATATGACATGTAAAACACCTTGTAAATATGAATTTTGCTGGATATGCCTTGGTCCATGGAGAGAACATGTGGGTTATTCTTGCAATCGCTATGAAGCAACTAAACAAAGTGAAActgaaaaaataagagaaaggGCAAAGAATTACCTGCAGAAGTACACACATTATTATGAGCGATGGGCTGGCAACCATTCTTCAAGGCAAAAAGCTCTTGCTGATCTACAACGGATGCAAAGTGATGATATTGGGAAGCTTAGTGACTCACAGCAACTACCTGAGTCACAGCTTAAGTTCATAACTGATGCCTGGTTACAGATAGTTGAGTGCAGGAGGGTATTGAAGTGGAcatatgcatatggatactatTTACCTGATAATGAGCAAGCTAAAAAGAAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCATTGTGCTGAAAAGGACATTCAATTATTCCTCAGTGACGATGTCGTTGCCCCATCTGAAGAATTCAATGGTTTTCGTACAAAACTAACTGACTTGACCTGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTAAGTGATGTGGATAGCAATGGAATAATAACCGATGATCATTGGTTTTGTGGGCGATGTACCTTTGCGAATGTCATATCTGCCACCACATGCCAGATGTGCAATCAACAGCGTCCCGACAAAATTCACATCAAAAGTTGA 1638 0.3962 MDSGGDMHDANDIEYYSDYDDDDAAEDYFDDDDDDSHPAKSRRIEQSFTILKESDIRQRQEDDISRLADFLSISHVAASILLRHYNWTVSRVSDAWFADEGEVRRSVGLLENPVYVNPADAEELTCGICFDVYPLSEIETASCGHPFCFSCWGGYIGTSINDGPGCLMLRCPEPACGAAVDQNMINLLASGEDKEKYDRYLLRSYIEYNKKTKWCPAPGCEHAVNFDAAGTGKDYDVSCLCSYSFCWNCTEEAHRPVDCDTVSKWILKNSAESENTNWILAYTKPCPKCKKPIEKNHGCNHMTCKTPCKYEFCWICLGPWREHVGYSCNRYEATKQSETEKIRERAKNYLQKYTHYYERWAGNHSSRQKALADLQRMQSDDIGKLSDSQQLPESQLKFITDAWLQIVECRRVLKWTYAYGYYLPDNEQAKKKFFEYLQGEAESGLERLHHCAEKDIQLFLSDDVVAPSEEFNGFRTKLTDLTCVTRNYFENLVRALENGLSDVDSNGIITDDHWFCGRCTFANVISATTCQMCNQQRPDKIHIKS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00512 545 Gene3D - 255 503 - -
Tsu07g00512 545 Pfam Ariadne domain 337 499 IPR045840 -
Tsu07g00512 545 ProSiteProfiles Zinc finger RanBP2 type profile. 510 539 IPR001876 -
Tsu07g00512 545 SUPERFAMILY RING/U-box 272 333 - -
Tsu07g00512 545 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 513 IPR031127 GO:0004842|GO:0016567
Tsu07g00512 545 CDD RING-HC_RBR_TRIAD1_like 126 176 - -
Tsu07g00512 545 SUPERFAMILY Ran binding protein zinc finger-like 511 537 IPR036443 -
Tsu07g00512 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 208 IPR013083 -
Tsu07g00512 545 MobiDBLite consensus disorder prediction 22 42 - -
Tsu07g00512 545 SUPERFAMILY RING/U-box 195 266 - -
Tsu07g00512 545 SMART ibrneu5 272 328 IPR002867 -
Tsu07g00512 545 SMART ibrneu5 195 259 IPR002867 -
Tsu07g00512 545 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 17 513 - -
Tsu07g00512 545 Gene3D - 509 545 - -
Tsu07g00512 545 ProSitePatterns Zinc finger RanBP2-type signature. 514 533 IPR001876 -
Tsu07g00512 545 ProSiteProfiles Zinc finger RING-type profile. 126 170 IPR001841 -
Tsu07g00512 545 SUPERFAMILY RING/U-box 121 208 - -
Tsu07g00512 545 Pfam IBR domain, a half RING-finger domain 195 259 IPR002867 -
Tsu07g00512 545 Pfam IBR domain, a half RING-finger domain 267 328 IPR002867 -
Tsu07g00512 545 ProSiteProfiles TRIAD supradomain profile. 122 332 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00512 Tsu-Chr7 4036043 4037680 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00512 1 537 ARIADNE family AT1G65430 61.498 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00512 K11968 - gmx:100810427 793.112