Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00494 ATGGTGCGCACCGTTCATCCGCCGCCGGTGGAGGTTCCGCTATTTCCAGCTCCGGTGGATCACTCTCAGAATCCGTTTTACATTCATCCTTCGGAAAATCCTGCTATTCCTCTCGTCAATCCTGTTCTCGATGGCAAGAACTACCATGCCTGGGCTCGATCCATGAAGAAAGCGATCATCACCAAGAACAAGCTCCGTTTTCTTGATGGATCCTCTCCGATGCCGAACGAACTCGATGCCACGTACGAATCATGGTTACGTTGCAATAATCTGAAGGAGAAGGAGGGGAGGGATATAGAATTAATGGAAGAAAGTGGTGGAAAGGAGGAAACCCTACCGCCGGGATTTCGATTTCATCCAACAGATGAAGAACTTATCACTTGCTATCTTATAAATAAGATATCAGATTCTAGTTTTACAGGCAAAGCAATAACTGATATAAATCTCAATAAATCTGAACCATGGGAGCTACCAGGGAAAGCAAAGATGGGAGAAAAAGAATGGTACTTTTTTAGTATGAGAGATCGTAAATATCCAACGGGTGTGAGAACCAATAGAGCAACTAATAGTGGATATTGGAAGACCACAGGGAAAGATAGAGAAATATTGAACAGTGTTACATCAGAATTGGTTGGTATGAAGAAGACTTTGGTTTTTTACAAAGGTAGAGCTCCAAGAGGAGAGAAAAGTAATTGGGTCATGCATGAATATCGCATTCACTCTAAATCAACTTTTCGAACAAACAAGCAGGAAGAATGGGTGGTATGTCGGATATTCAAGAAGAGTGGTAGTGGAAAAAAGTATCCTTGTAATAATTCCAACTCCAACCATACAAGAGCAGGATTGAATCCTTATAGCATGCAGGAAATAGGTTCTAGTAATATGGTTCAAATTCCACAACAAATGATGCAGTACTATCTTCAGGGACTGCATGGAGATCCTTCTACTTCTCATTTCATTTACGGACGGAACAATAATAATTACATTAACGGTTCAGATGCAGAGGTTTTAAGAGGAGGAATAATGCAATCTCATCAGATGAACTATCCTTCAATATTGCCAGTAACTACAGGAGAAGAGGGAGGAGGATTCAGCATTTCAGGGCTTAATTTGAACCTTGGATCAGGTGGGGGAGGAGGAGCTgccacaacaacaacacaacatATTTTGCGCCCAATGCAGCATTCTCAATATGCAATGGCAGATAATGTCAGTTTAACAAACATGAATATGAATTCTGTTGGTACAGATCagaatattaataattttgtaggtTATAATGGTATGGAGCATTGCATGGATCTTGACACTTACTGGCCTAATTCCTACTAA 1332 0.3979 MVRTVHPPPVEVPLFPAPVDHSQNPFYIHPSENPAIPLVNPVLDGKNYHAWARSMKKAIITKNKLRFLDGSSPMPNELDATYESWLRCNNLKEKEGRDIELMEESGGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGKAITDINLNKSEPWELPGKAKMGEKEWYFFSMRDRKYPTGVRTNRATNSGYWKTTGKDREILNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQEEWVVCRIFKKSGSGKKYPCNNSNSNHTRAGLNPYSMQEIGSSNMVQIPQQMMQYYLQGLHGDPSTSHFIYGRNNNNYINGSDAEVLRGGIMQSHQMNYPSILPVTTGEEGGGFSISGLNLNLGSGGGGGAATTTTQHILRPMQHSQYAMADNVSLTNMNMNSVGTDQNINNFVGYNGMEHCMDLDTYWPNSY 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00494 443 SUPERFAMILY NAC domain 109 261 IPR036093 GO:0003677|GO:0006355
Tsu07g00494 443 Gene3D NAC domain 121 265 IPR036093 GO:0003677|GO:0006355
Tsu07g00494 443 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 106 430 - -
Tsu07g00494 443 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 106 430 - -
Tsu07g00494 443 ProSiteProfiles NAC domain profile. 112 261 IPR003441 GO:0003677|GO:0006355
Tsu07g00494 443 Pfam gag-polypeptide of LTR copia-type 29 75 IPR029472 -
Tsu07g00494 443 Pfam No apical meristem (NAM) protein 113 239 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00494 Tsu-Chr7 3852513 3864311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00494 108 441 NAC Transcription Factor Family AT2G24430 48.034 8.25e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu07g00494 NAM 5.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00494 - - lja:Lj1g3v2035130.1 387.111