Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00476 ATGGGAAGTGAGAGGAGAGTTCCTGCTTCATCGGATACTGTACAGAAAATTAGACCGTTACATGGGAGGACTACTGGCCCTACAAGGCGCTCCACTAAAGGACAATGGACGACTGAGGAGGATGAAATTTTGAGGAAGGCTGTTGAGCGTTTTCAAGGAAAGAATTGGAAAAAAATAGCCGAGTCTTTCAAGGATAGAACAGATGTACAGTGCCTGCATAGGTGGCAAAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCTTGGTCTAAAGAGGAAGATGAAGCAATTATTGATTTGGTAAACAAATATGGGCCTAAAAAGTGGTCTACTATAGCACAGCATTTACCCGGACGTATCGGTAAGCAATGTCGAGAAAGgTGGCATAATCACCTTAATCCTTCTATAAACAAGGAAGCATGGACACAGGATGAAGAGTTGGCTCTAATACATGCTCATAATATTTATGGGAATAGATGGGCAGAATTATCGAAGTTTTTGCCTGGAAGGACAGACAATGCTATAAAGAACCACTGGAAtagttctgtcaaaaaaaaattggactcTTACTTGGCATCGGGCTTGCTTGCTCAGTTTCAAAATGTACCTATTGTTGGAAATCTGCATCAACCCATTGCATCATCCTCTGCTAGGTTGCAGTATAGTGTAGATGATAATGGTCCTACGGTGACTGAAGGTGAGGAAGTTTCACAGTGTAGCCAGGAATCAGCTAATGCCAGTCACTTTCCGTCAGAGTTGAGTATTGTTGTTATACAAAATGGGGAGGAGTACAGGTCAAATGAAGAATCTAATCAAGCATCATGTTCAGATATATATTACATGTCTTTGGATGATATTACTCTCCAAGAATCATTTGAGCAGAAATATTCAAACGAACCTGGAAGCTCCTCCGCAAACGTGGATTGCCAATTTAATTTACATGCTGTGCCCAATATTTCCTCGCATGATGTTGGGCAGGAACCATCACAGTTCCAAAATGATACTTTAGCTCCTAGTGAAAGTCATAACATGATGATTGTTCCATATGAATATCAATCTTCATCTATGGATAATGATGCTAAAGGAGAACAAAGCATGTTGATAACTGATGATGATTGTTGCAGATTCCTATTTTCAGAGGCAATGAGTGATGAATGCTTTTCCTCTGGAGGAGTAAATAATGTTGACTTGTCTGGACGCACTTCATCTCTTTGTCAGTCATCTTTACCATCTGGTGATAGGATGATGATGTATACTGCTGAAGCCAACCAGTTGGTAGGCTCTGAGGATCAAAAGTATGTCTCGAGAGAACATGATGGCTTGGTTTATGCCAATGATAACAGTAGGATAGAAGATGTTGTAAAAGATGATAACTTAAAATTGGTCCCTGGAAATAGTTCTGGCTGTGGGTCAGATACTATGCAAACTTGCTATCCAACTGATGAAAAGCCAAATGTGCATATACAACAGGAGGAAACGGGAGGAACTTTATGTTATGAACCACCTCGCTTTCCAAGCTTGGATATTCCTTTCTTGAGCTGTGATCTTGTACAATCCGGGGATATGCAGCAAGAATTTAGTCCATTGGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTTACTCCTTTAAGATTGTGGGACTCGCCCTCTCACATTGATAGTCCAAATGCTTTGTTAACAAGTGCCGCTAAAACTTTCACTAGTACACCATCcataatgaagaaaaagaaacgaAACAGAGAACTTTTAACTCCACTGTCAGATAGAAGAATGGAGAAAAAGCATGAGATTGACATGACATCAACTTTGATCACAAACTTTTCCCGTTTGGATGTCATGTTTGATGACAATGAGACTTTAGGTATTGAAGATGATAAAGAAAATTGTGGACCAGTTTTTAAGGTGGGGGAGAAAAATAACTCTCAGGAGAAGATTGAGCAGCCTCCTCTTGATGCCGATTCTAAGATGAAGAATGATATTGATACTGCTGCTGAAATTGTGCAACAGCCTTCTAGAATTTTGGTTGAACGTGATATGAATGATCCTTCGCTGTATTCTCCTAGTCAAATTGGTTTGAAATCAGACGTAGTTCTAAGTTTAAGTGCTAGAAGTCATAAAAAACCAGTCTCAAGACTTAATTCTCCTTGTGTTCGATTAAAGGAGCACGAAAGACTCTCAGTTTCTGTTACTTGTGTACAATCCATCTGTTCATCGTCAGGCCCAGGAGAGAATATGGGGGATCAAACTGGAAATGATGATAGTTTTGAAACAAATTGCATTTTTGGCGGAACACCTTTTAGGAAAAGCTTTGAATCACCTTCAGCATGGAAATCCCCCTTGTTCATCAGCACTTTTATGTCTAGCCCCAGGATTGATACTGAAATTACAATTGAGGACTATGGGTGTTTCTTTAGCCCGGGCGATAAAAGCTATGATGCAATCGGATGGTTGAAACAAATTGAAGAACACACTGCTGCTCAATATGCCAATGCTCTAGAAGTCTTGGAAAAGGAAACTCCTAAGGCATTAACAAAAGATGTCTCTAGAAACGACCATGAAAATAACGATCCTCATAATCAACCTGCAAACCATTCTCAGTCGGCTTCAAATGTTTTGGTCGAGCGACGCATGCTTGACTTCAGCGAATGTGAAACTCCAGACAAGGGTGACAAGGGTGACAAGGGAAAATCCTCAGCTATAAGCATTTCAAGTCCTTCTTCGTATTTGTTGAAGGGCTGTAGATAG 2748 0.3967 MGSERRVPASSDTVQKIRPLHGRTTGPTRRSTKGQWTTEEDEILRKAVERFQGKNWKKIAESFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEAIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQDEELALIHAHNIYGNRWAELSKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQFQNVPIVGNLHQPIASSSARLQYSVDDNGPTVTEGEEVSQCSQESANASHFPSELSIVVIQNGEEYRSNEESNQASCSDIYYMSLDDITLQESFEQKYSNEPGSSSANVDCQFNLHAVPNISSHDVGQEPSQFQNDTLAPSESHNMMIVPYEYQSSSMDNDAKGEQSMLITDDDCCRFLFSEAMSDECFSSGGVNNVDLSGRTSSLCQSSLPSGDRMMMYTAEANQLVGSEDQKYVSREHDGLVYANDNSRIEDVVKDDNLKLVPGNSSGCGSDTMQTCYPTDEKPNVHIQQEETGGTLCYEPPRFPSLDIPFLSCDLVQSGDMQQEFSPLGIRQFMMSSMNCLTPLRLWDSPSHIDSPNALLTSAAKTFTSTPSIMKKKKRNRELLTPLSDRRMEKKHEIDMTSTLITNFSRLDVMFDDNETLGIEDDKENCGPVFKVGEKNNSQEKIEQPPLDADSKMKNDIDTAAEIVQQPSRILVERDMNDPSLYSPSQIGLKSDVVLSLSARSHKKPVSRLNSPCVRLKEHERLSVSVTCVQSICSSSGPGENMGDQTGNDDSFETNCIFGGTPFRKSFESPSAWKSPLFISTFMSSPRIDTEITIEDYGCFFSPGDKSYDAIGWLKQIEEHTAAQYANALEVLEKETPKALTKDVSRNDHENNDPHNQPANHSQSASNVLVERRMLDFSECETPDKGDKGDKGKSSAISISSPSSYLLKGCR 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00476 915 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Tsu07g00476 915 Pfam Myb-like DNA-binding domain 137 179 IPR001005 -
Tsu07g00476 915 Pfam Myb-like DNA-binding domain 85 131 IPR001005 -
Tsu07g00476 915 SUPERFAMILY Homeodomain-like 82 178 IPR009057 -
Tsu07g00476 915 PANTHER TRANSCRIPTION REPRESSOR MYB5 635 914 - -
Tsu07g00476 915 PANTHER TRANSCRIPTION REPRESSOR MYB5 498 620 - -
Tsu07g00476 915 MobiDBLite consensus disorder prediction 1 38 - -
Tsu07g00476 915 CDD SANT 36 79 IPR001005 -
Tsu07g00476 915 Gene3D - 32 84 - -
Tsu07g00476 915 PANTHER TRANSCRIPTION REPRESSOR MYB5 10 408 - -
Tsu07g00476 915 Gene3D - 85 136 - -
Tsu07g00476 915 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 186 IPR017930 -
Tsu07g00476 915 SUPERFAMILY Homeodomain-like 34 89 IPR009057 -
Tsu07g00476 915 MobiDBLite consensus disorder prediction 878 896 - -
Tsu07g00476 915 ProSiteProfiles Myb-like domain profile. 132 182 IPR001005 -
Tsu07g00476 915 Coils Coil 819 839 - -
Tsu07g00476 915 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 135 IPR017930 -
Tsu07g00476 915 Gene3D - 138 197 - -
Tsu07g00476 915 ProSiteProfiles Myb-like domain profile. 80 131 IPR001005 -
Tsu07g00476 915 PANTHER MYB PROTEIN-RELATED 10 408 - -
Tsu07g00476 915 PANTHER MYB PROTEIN-RELATED 635 914 - -
Tsu07g00476 915 PANTHER MYB PROTEIN-RELATED 498 620 - -
Tsu07g00476 915 CDD SANT 139 179 IPR001005 -
Tsu07g00476 915 SMART sant 136 184 IPR001005 -
Tsu07g00476 915 SMART sant 84 133 IPR001005 -
Tsu07g00476 915 SMART sant 32 81 IPR001005 -
Tsu07g00476 915 MobiDBLite consensus disorder prediction 848 915 - -
Tsu07g00476 915 CDD SANT 87 131 IPR001005 -
Tsu07g00476 915 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Tsu07g00476 915 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 79 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00476 Tsu-Chr7 3688977 3694764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00476 21 890 MYB Transcription Factor Family AT4G32730 42.418 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g00476 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00476 - K09420 cam:101506533 1511.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00476 07 3688977 3694764 Tsu07g00476 07 3688977 3694764 ECH