Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00456 ATGGCAGATTTACCACAAGGTGTGACTCCAAGTAAAGGTGTTGTAATAATTGTCCTTTCCATAATGTTTCTCATTACTTTTATCTTACTTGTTTATGTTAAATTCTGTCGCGTTACGCCTATTCATCTTCTAAATCATCGCCCtcttcatcttcaaaacaaTCAAGAACAAATTCAATCAAGGTCTATAGTTTCTGGTgttgaaaaaaatgttattgaaaCACTTCCTTTCTTCAAATTTTCATCTTTAAAGGGATCTAAACAAGGACTAGAATGTACCGTTTGTTTGTCAAAATTCGAAGATGAAGAGATTCTTAGATTGTTGCCGAAATGCAAACATGCATTTCATATGAATTGTATTGATATGTGGCTTGAAAGTCACTCTACTTGTCCTCTTTGTAGGTATATGGTTgaagaaaatgacataaaaaactTCACTTTCTCATTCAGCTCAAGATTCTTAAGAGTCCCTTCAAATTTAGGTGAAGACCCAAATCTTGAAATCTTTATTCAACGAGAACCGTCACAAAGAAGAAGCAACAAAGAAGAACAAGAACTGGTTCTTCTTGATCTTGAAGAAGGTGGTAGCAGTAATAATGTTACAAAGTGGAAGCAACAACAATCTTTGCATATGATTAATCATAAAATATTAATCTCTGATGCTGTTACAAGGAGTAGGTGGAGCGATCTTAATTCTTCAGATTTGTTATCATTGAGCAGTGAGATGCTTCATGATGTGTCAAGTGCGAGATTCGATCCTAATGATGAGGATGAAAATTCATTTACAGCATTGAATCCTGGTGAGAAAAGGTCTATGTCTGAGATTGCAAATGTTCCAAGGTTTGTGGAAATCAACAGAAGGAACGGTAATGGAGAGAATGGAAGTGATGAGAGGTTGTGGAGAATTTGGTTGCCAATTGCAAGGAGAACAGTTCAATGGTTTGCAAGAcaagaaacaaattcagttcAATCACAGCATAAACATTTAGCTTCAAATGTTTGA 1002 0.3313 MADLPQGVTPSKGVVIIVLSIMFLITFILLVYVKFCRVTPIHLLNHRPLHLQNNQEQIQSRSIVSGVEKNVIETLPFFKFSSLKGSKQGLECTVCLSKFEDEEILRLLPKCKHAFHMNCIDMWLESHSTCPLCRYMVEENDIKNFTFSFSSRFLRVPSNLGEDPNLEIFIQREPSQRRSNKEEQELVLLDLEEGGSSNNVTKWKQQQSLHMINHKILISDAVTRSRWSDLNSSDLLSLSSEMLHDVSSARFDPNDEDENSFTALNPGEKRSMSEIANVPRFVEINRRNGNGENGSDERLWRIWLPIARRTVQWFARQETNSVQSQHKHLASNV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00456 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 144 IPR013083 -
Tsu07g00456 333 SUPERFAMILY RING/U-box 73 139 - -
Tsu07g00456 333 CDD RING-H2_EL5_like 91 134 - -
Tsu07g00456 333 PANTHER RING-H2 FINGER PROTEIN ATL4J 255 328 - -
Tsu07g00456 333 PANTHER RING-H2 FINGER PROTEIN ATL4J 2 254 - -
Tsu07g00456 333 SMART ring_2 92 133 IPR001841 -
Tsu07g00456 333 Pfam Ring finger domain 91 134 IPR001841 -
Tsu07g00456 333 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Tsu07g00456 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 255 328 - -
Tsu07g00456 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 2 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00456 Tsu-Chr7 3525889 3526930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00456 10 329 C3H Transcription Factor Family AT2G20030 41.061 9.93e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00456 K10664 - gmx:100816668 367.851