Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00450 ATGACTAGTACTATTCAACAACCTCAAAACTCAGAAACTGATAGTACCTCAAATTCACCATCACCACCATCACAATCCCAAAAAATTAAACGTCTTAGAGACACAAACAAGCATCCGGTATACCGTGGGGTCCGAATGCGAAATTGGGGTAAATGGGTGTCTGAAATCCGCGAGCCGAGGAAAAAATCCCGAATATGGCTCGGCACATTTCCCACGCCGGAAATGGCTGCTCGAGCTCATGACGTAGCTGCTCTTAGCATAAAAGGAAGTGGCGCCATTCTCAATTTCCCCGAATTAGCTAACTCGCTCCCTCGGCCAGCCTCACTCGCTCCCCGCGATGTTCAAGCCGCCGCTACTAAAGCCGCTCACATGGAGTTTCCTTCTTCAACAAACTCCTATGAATTGAGTGAAATAACTGAACTTCCTCGTTTGGGAAATTGTGGAGATTTTGAGAAAGAGTTTGTGTTTATGGATTCTATTGATGCTTCTTGGATGTTTCAACCTCCTTGCTTGCACACCATGGAAGATGTGATTTGGAATGGAGTTTATAATAACTATAGTTAG 564 0.4486 MTSTIQQPQNSETDSTSNSPSPPSQSQKIKRLRDTNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSGAILNFPELANSLPRPASLAPRDVQAAATKAAHMEFPSSTNSYELSEITELPRLGNCGDFEKEFVFMDSIDASWMFQPPCLHTMEDVIWNGVYNNYS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00450 187 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Tsu07g00450 187 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Tsu07g00450 187 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Tsu07g00450 187 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Tsu07g00450 187 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 131 - -
Tsu07g00450 187 MobiDBLite consensus disorder prediction 1 32 - -
Tsu07g00450 187 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Tsu07g00450 187 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Tsu07g00450 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 131 - -
Tsu07g00450 187 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Tsu07g00450 187 MobiDBLite consensus disorder prediction 1 29 - -
Tsu07g00450 187 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00450 Tsu-Chr7 3461983 3462915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00450 10 186 AP2-EREBP Transcription Factor Family AT5G11590 55.714 4.11e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu07g00450 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00450 K09286 - gmx:100794316 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00450 07 3461983 3462915 Tsu07g00450 07 3461983 3462915 ECH
Tsu07g00450 07 3461983 3462915 Tsu01g00887 01 8118099 8118993 PCT