Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00438 ATGGAAGCTCAAGAGTTTTTCCATACCAACTTTTGCCAACAATTAGACAACAATTCCACAACCAACAATGTATTAAACACTGCTGCTTCCGACCACTTTGTAGTTGAAGATCTCTTTGATTTctctaatgatgatgatgttgccATTACCGACCCCGCTTTCGACGATTCTCCTCCTACCAACTCTAATGATTCTCCACCTCCTGAAACCAACACTAATTCCAATTTTTTCGTCGATAATTCGTGCCAAAACTCTGCCGACGGCCCTTTCTCCGGCGAACTTTCCGTCCCGTATGATGATCTTGCGGAGCTGGAATGGCTATCCAAATTTGCCGAGGAATCATTTTCGAGCGAGGACCTACAAAAGCTACAATTGATATCTGGTGTGAAAGCATCAAATAACACTGCATCAAAAACCCAAGACGAGTCGAACCCAATATTACACCCTCAAATGTCAGTCCCAGCCAAAGCTCGCAGTAAGCGGTCACGTGGACCTCCATGCAACTGGACTTCACGTCTTCTAGTTCTCTCTCCAACTATCACCACCACATCTTCTGATTCTGATACCATTGCGCCACCAAAGAAACCCTCTCCGAGAAAGAGAGACACCAGTGATGGAGGAGAGGGACGCAAGTGTCTTCATTGTGCCACAGACAAGACTCCTCAATGGCGGACAGGGCCATTAGGCCCAAAGACACTTTGCAACGCTTGTGGTGTTAGGTACAAGTCAGGTCGACTTGTACCTGAGTATAGGCCTGCAGCAAGTCCAACATTCGTGTTAACTAAACACTCCAACTCGCATCGAAAGGTGCAAGAGCTCCGGCGCCAAAAGGAGATGATGAGGGCCCAACAACACCAATTGTTGCAACTACAACATCATCACAACCTTATGTTTGATGGAGCATCCAACGGTGATGATTACTTGATCCATCAACATGTGGGACACGATTTCACGCACCTAATGTAG 966 0.4545 MEAQEFFHTNFCQQLDNNSTTNNVLNTAASDHFVVEDLFDFSNDDDVAITDPAFDDSPPTNSNDSPPPETNTNSNFFVDNSCQNSADGPFSGELSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGVKASNNTASKTQDESNPILHPQMSVPAKARSKRSRGPPCNWTSRLLVLSPTITTTSSDSDTIAPPKKPSPRKRDTSDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQHQLLQLQHHHNLMFDGASNGDDYLIHQHVGHDFTHLM 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00438 321 Coils Coil 270 290 - -
Tsu07g00438 321 PIRSF Txn_fac_GATA_plant 2 302 IPR016679 GO:0003677|GO:0005634|GO:0045893
Tsu07g00438 321 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
Tsu07g00438 321 PANTHER GATA TRANSCRIPTION FACTOR 1 321 - -
Tsu07g00438 321 SMART GATA_3 206 256 IPR000679 GO:0006355|GO:0043565
Tsu07g00438 321 MobiDBLite consensus disorder prediction 193 211 - -
Tsu07g00438 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 269 - -
Tsu07g00438 321 MobiDBLite consensus disorder prediction 172 191 - -
Tsu07g00438 321 MobiDBLite consensus disorder prediction 134 211 - -
Tsu07g00438 321 Gene3D - 207 287 IPR013088 GO:0006355|GO:0008270
Tsu07g00438 321 CDD ZnF_GATA 211 258 IPR000679 GO:0006355|GO:0043565
Tsu07g00438 321 ProSiteProfiles GATA-type zinc finger domain profile. 206 242 IPR000679 GO:0006355|GO:0043565
Tsu07g00438 321 MobiDBLite consensus disorder prediction 49 82 - -
Tsu07g00438 321 MobiDBLite consensus disorder prediction 55 82 - -
Tsu07g00438 321 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
Tsu07g00438 321 PANTHER GATA TRANSCRIPTION FACTOR 1 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00438 Tsu-Chr7 3376572 3379373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00438 31 321 C2C2-Gata Transcription Factor Family AT4G32890 50.479 8.18e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu07g00438 GATA 1.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00438 - - gmx:100776588 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00438 07 3376572 3379373 Tsu07g00438 07 3376572 3379373 ECH