Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00408 ATGGCAATCGCAACAGAAACTCAACCTCAGCCTCAACAACACACGGCTTCTTCGGAGGTTTCAGGTTCAGCTAAGGAGCAAAGAAGGTGGACTCTAAATGATTTTGATATTGGAAAACCTCTTGGAAGGGGAAAATTCGGCCATGTCTATTTGGCCAGAGAAAAAACTAGTAATCATATTGTTGCTCTGAAAGTGCTCTTTAAGAGCCAATTACAACAATCCCAAGTTGAGCATCAGCTTCGACGAGAAGTTGAAATACAAAGTCATCTCCGACACCCCCATATCCTGCGCCTCTATGGATACTTCTATGATCAGAAACGAGTTTACTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAGAAATGCAAATATTTCAGTGAAAGACGTGCAGCTACTTATGTTGCATCATTGGCCCGAGCTCTTATATATTGCCATGGAAAGCATGTAATACATAGGGACATTAAACCGGAGAATCTTCTTATTGGTGCACAGGGTGAACTGAAGATAGCAGATTTTGGGTGGTCAGTGCACACATTCAATCGTAGGCGGACCATGTGCGGCACACTGGATTACCTTCCACCTGAGATGGTGGAGAGTGTGGAACATGATGCTAGCGTGGATATATGGAGCCTTGGTGTCCTTTGCTATGAGTTTCTTTATGGAGTCCCCCCTTTTGAGGCTAAAGAACATTCTGATACTTATAGGAGGATAATTCAAGTGGATCTCAAATTCCCTCCGAAACCAATTGTTTCTTCTGCTGCGAAAGACCTCATCAGCCAGATGCTGGTCAAGGATTCCTCTCAAAGACTTCCATTGCACAAACTCCTTGAACACCCTTGGATTGTTCAGAATGCGGAGCCCTCCGGTATATACAGAAGCTAG 897 0.437 MAIATETQPQPQQHTASSEVSGSAKEQRRWTLNDFDIGKPLGRGKFGHVYLAREKTSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIIQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGIYRS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00408 298 Pfam Protein kinase domain 37 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00408 298 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Tsu07g00408 298 PIRSF ILK 3 283 - -
Tsu07g00408 298 Gene3D Transferase(Phosphotransferase) domain 1 119 295 - -
Tsu07g00408 298 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 297 IPR030616 GO:0004672
Tsu07g00408 298 CDD STKc_Aurora 34 287 - -
Tsu07g00408 298 SMART serkin_6 35 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00408 298 Gene3D Phosphorylase Kinase; domain 1 22 118 - -
Tsu07g00408 298 MobiDBLite consensus disorder prediction 1 26 - -
Tsu07g00408 298 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 1 297 - -
Tsu07g00408 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Tsu07g00408 298 SUPERFAMILY Protein kinase-like (PK-like) 22 290 IPR011009 -
Tsu07g00408 298 ProSiteProfiles Protein kinase domain profile. 35 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00408 Tsu-Chr7 3141357 3144315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00408 25 292 CBL-interacting serine-threonine protein kinases AT5G10930 35.636 2.47e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Tsu07g00408 Pkinase 1.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00408 K08850 - gmx:100803678 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00408 07 3141357 3144315 Tsu07g00408 07 3141357 3144315 ECH