Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00390 ATGGCTCATCATCAaccatttttcctttttgggcTAATAGTTATGATTTTCATAACCAACATGTCACATGTTATCAGCACAAACCAGTCTGAGTTTTTTTCTGTTATGAAAGAGTCTCTCTCAGGAAACTTCCCACTTGATTGGAGTGCAAGCAAAGAAGATAAACCAATTTGCGAATTCACCGGAATCACCTGTGACGACAAAGGAAACGTTATAAGTCTCGATTTTACAGGTTGGTCATCACTTTCCGGTAACTTCCCTTCAAATTTTTGCTCTTGCCTTCCAAACTTACGTGTCATAAACATCGGTTACACCAAATTCAAGTTTCCGATAAATAGTATAATCAACTGTTCTCACTTAGAACAGCTCAACATGAACCATATGCACCAGTCAGGAACACTTCCCGATTTCTCGTCTTTAAAATCACTCAGAGTTCTCGACTTATCCTATAACTCCTTCACCGGCGATTTCCCTGTGTCTGTTTTCAACCTCACAACTCTTGAAGTTCTCAATTTCAATGAAAACAGTAACTTCAATCTCTGGCAATTACCAAAAAACTTTGAAAGATTGAAAAATCTCAAGTCCATGGTTTTATCAACATGCATATTGCATGGTCAAATTCCACCATCCATATCAAACATAACAACTCTTCTTGATCTTGAGTTAAGTGGAAACTTCCTCACAGGTCAAATTCCAAAAGAACTTGGTTTATTGAAAAACTTGCAACTGCTTGAACTTTACTATAACTTCAACCTTGTTGGTAACATTCCAGAAGAGCTAGGAAACTTAACTGATCTCGTTGATTTGGATATGTCGGTAAACAAGTTTACCGGAACAATCCCTTCTTCGGTTTTTAAACTTCCTAAACTTCAAGTTCTTCAGCTTTACAATAACAGTCTCAGTGGTGAAATTTCAGATGCAATTGAAAACTCAACAACACTTAGAATATTGTCTCTTTACGACAATTTCTTAACCGGACATGTTCCGCCAAAACTAGGACAGTTCTCAGGAATGACTGTTCTTGATTTGTCAGAAAACAGATTGTCTGGTCCTTTACCAGAACATGTTTGTAAAGGAGGTAAACTgttatattttcttgttttgGATAACTTTTTCTCTGGTGTTATACCAGACAGTTATGAAAACTGCATGTTTCTGTTACGGTTTCGCGTCAGTAATAACCGTTTAGAAGGTTCTGTTCCAAAAGGACTGTTAAGTTTACCACATGTTTCAATCATTGATTTGAGTAGCAACAATTTGACCGGTCCGATTCCCGAGATTAACGGAAATTCTAGAAACTTGTCTGAACTTTTCCTTCAGAGGAACAAGATTTCAGGAGAAATAACTCCAACAATTTCTAGAGCTATTAACCTTGTCAAAATTGATTTCAGCTATAACTTTCTCTATGGTCCAATTCCTTCTGAAATTGGTAACCTTAGAAAGCTTAACTTGCTTATGCTACAAGCTAACAAGCTGAACTCAACTATTCCTGGTTCATTATCTTCCTTGGAATCACTTAACCTTCTAGATCTTTCCAATAACCTCTTAACCGGAAACATCCCCGAAAGCCTCTCCGTACTTTTGCCAAACTCCATTAATTTCTCACATAACCTTCTTTCTGGTCCTATTCCTCCTAAATTGGTTAAAGGAGGTTTAGTTGAAAGCTTTGCAGGAAATCCTGGTTTATGTGTGATGGTGCCGGTTTATGCTAATTCTTCTGATCAAAAAAACTTTCCCTCATGTTCACATGGTTACAAGAGCAAGAAGATGAACACTATTTGGGTAGCTGGTGTGTctgtgattttgatttttgtaggTGCTGCTTTGTTCTTGAAAAAAAGATGTAGCAAAGACGCGGCTGCGGTCGAACATGAGGACACACtctcttcttcctttttctcttaTGATGTTAGGAGCTTTCACATGATTAGTTTTGATCAAAGAGAGATTGTTGAGTCTTTGGTGGAAAAGAATATAATGGGACATGGAGGATCAGGGACAGTGTACAAAATTGAGCTGAAAAGCGGAGATATTGTCGCGGTTAAGAGGCTTTGGAGTAGAAGTTCAAAGGATTCATCTCCCGAAGATGCATTATTTGTGGACAAGGCATTGAAAGCTGAGGTGGAGACACTTGGAAGTATAAGACACAAGAACATAGTTAAGTTATATTGTTGCTTCTCAAGTTTGGATTGTAGCTTATTGGTTTATGAGTACATGCCAAATGGTACTTTGTATGATTCACTTCACAAGGGTTGGATTCATTTGGATTGGCCTACAAGGTATAGGATTGCACTTGGAATTGCTCAAGGTCTTGCTTACCTTCATCATGATTTGGTTTTTCCTATTATCCATAGAGATATTAAGTCAACCAATATTCTCTTGGATGAAGATTACCATCCTAAGGTTGCTGATTTTGGGATCGCTAAGGTTTTACAAGCAAGAGGAGGAAAAGATTCCACAACCACTGTTATTGCAGGAACATATGGTTACTTAGCCCCAGAATATGCATATTCACCAAGGGCAACTACAAAGTGTGATGTGTATAGTTTTGGTGTGATTTTGATGGAACTGTTAACTGGAAGGAAGCCAATTGAGTCAGAATTTGGAGAAAACAGAAACATAGTTTTTTGGGTTTCAAACAAAGTAGAAGGCAAAGAAGGGGCTAGACCAAGTGAAGTTTTTGATCCAAAGTTATCATGTTCATTCAAAGATGACATGGTTAAAGTTTTAAGGATTGCTATTAGATGCAGTTACAAAGCACCAGCTAGTAGACCAACCATGAAAGAAGTTGTTCAGCTTCTGATTGAGGCAGAACcaaaaaattctgattcttGCAAGTTGTCAACCAAAGATGCATCAACAAATGCTACTTTGGTAAAGAAATCATTTgagttataa 2898 0.3647 MAHHQPFFLFGLIVMIFITNMSHVISTNQSEFFSVMKESLSGNFPLDWSASKEDKPICEFTGITCDDKGNVISLDFTGWSSLSGNFPSNFCSCLPNLRVINIGYTKFKFPINSIINCSHLEQLNMNHMHQSGTLPDFSSLKSLRVLDLSYNSFTGDFPVSVFNLTTLEVLNFNENSNFNLWQLPKNFERLKNLKSMVLSTCILHGQIPPSISNITTLLDLELSGNFLTGQIPKELGLLKNLQLLELYYNFNLVGNIPEELGNLTDLVDLDMSVNKFTGTIPSSVFKLPKLQVLQLYNNSLSGEISDAIENSTTLRILSLYDNFLTGHVPPKLGQFSGMTVLDLSENRLSGPLPEHVCKGGKLLYFLVLDNFFSGVIPDSYENCMFLLRFRVSNNRLEGSVPKGLLSLPHVSIIDLSSNNLTGPIPEINGNSRNLSELFLQRNKISGEITPTISRAINLVKIDFSYNFLYGPIPSEIGNLRKLNLLMLQANKLNSTIPGSLSSLESLNLLDLSNNLLTGNIPESLSVLLPNSINFSHNLLSGPIPPKLVKGGLVESFAGNPGLCVMVPVYANSSDQKNFPSCSHGYKSKKMNTIWVAGVSVILIFVGAALFLKKRCSKDAAAVEHEDTLSSSFFSYDVRSFHMISFDQREIVESLVEKNIMGHGGSGTVYKIELKSGDIVAVKRLWSRSSKDSSPEDALFVDKALKAEVETLGSIRHKNIVKLYCCFSSLDCSLLVYEYMPNGTLYDSLHKGWIHLDWPTRYRIALGIAQGLAYLHHDLVFPIIHRDIKSTNILLDEDYHPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSPRATTKCDVYSFGVILMELLTGRKPIESEFGENRNIVFWVSNKVEGKEGARPSEVFDPKLSCSFKDDMVKVLRIAIRCSYKAPASRPTMKEVVQLLIEAEPKNSDSCKLSTKDASTNATLVKKSFEL 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00390 965 Pfam Protein kinase domain 656 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00390 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Tsu07g00390 965 SMART serkin_6 654 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00390 965 Gene3D Ribonuclease Inhibitor 179 282 IPR032675 -
Tsu07g00390 965 Gene3D Transferase(Phosphotransferase) domain 1 739 961 - -
Tsu07g00390 965 Gene3D Ribonuclease Inhibitor 29 178 IPR032675 -
Tsu07g00390 965 SUPERFAMILY RNI-like 70 350 - -
Tsu07g00390 965 PRINTS Leucine-rich repeat signature 503 516 - -
Tsu07g00390 965 PRINTS Leucine-rich repeat signature 338 351 - -
Tsu07g00390 965 Gene3D Ribonuclease Inhibitor 286 572 IPR032675 -
Tsu07g00390 965 Gene3D Phosphorylase Kinase; domain 1 637 738 - -
Tsu07g00390 965 SMART LRR_typ_2 140 164 IPR003591 -
Tsu07g00390 965 SMART LRR_typ_2 335 359 IPR003591 -
Tsu07g00390 965 SMART LRR_typ_2 479 502 IPR003591 -
Tsu07g00390 965 SMART LRR_typ_2 287 311 IPR003591 -
Tsu07g00390 965 SMART LRR_typ_2 503 527 IPR003591 -
Tsu07g00390 965 SUPERFAMILY Protein kinase-like (PK-like) 638 934 IPR011009 -
Tsu07g00390 965 ProSiteProfiles Protein kinase domain profile. 654 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00390 965 SUPERFAMILY L domain-like 251 566 - -
Tsu07g00390 965 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 7 946 - -
Tsu07g00390 965 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00390 Tsu-Chr7 2987291 2990854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00390 26 940 Receptor kinase-like Gene Family AT5G49660 63.112 0.0 1165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu07g00390 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00390 - - lja:Lj1g3v2096140.1 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00390 07 2987291 2990854 Tsu07g00390 07 2987291 2990854 ECH