Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00380 ATGGGTACTGGTTGGAGAAGAGCCTTTTGTACACGAGACCCTGAATCTACCATATCagataataacaacaacaacggAATCTCAAGCCCGAGTTCAAGCCCAAGCCCAAGAAGCTGTGTTCGATTGAGTTTTCTTTCTGGTGGTAGTAGTAATCCTTCAACACCACGTTTGCATCAATCTCAACCGGTTTCAAGTCCAAGCTTGCGTTGTCGTACAATAACTGAAGCAGCTTCTCAAATTACAAATGATAGCCCCAGATTTCATAGCAAAAACAATACTCCAAGAGCAACAAAATCTCCTAGACCAAATCAAACATCAAATCCTTCTTCTCCTCGTTCTCCTTTGAAGCTATCTCTCTTCAAGAACAGCTTCAAATTCAGGAGTAGCTGTGGAATCTGTTTGAATAGCGTGAAAACGGGACAGGGAATGGCGATATACACAGCAGAATGTGCACATGCTTTTCATTTCCCGTGTATAGCAGCACATGTACGCAACCATGCTACTCTCGTTTGCCCTGTCTGCAACGCTACATGGAAAGACGTTCCTCTGTTAGCGGCGCACAAGAATCTCGCCGCTACAAAATCCAACGAAATCACCAATGCAAGTGACAAAATACAAACGGAAAATCCTTCTCCGGTTCTTAGAACAAAGAACTTGGATCAGTCTCAACAACAAAAGCATTCTGAATCAATGAGATCCTATGACGATGATGAACCACTCATTTCTCCGAGTGGTGGAAGGATTAACACTATTCCTGAAGCAGATGAAAAcgcagaggaagaagaagacgaCGACAACGTTGAGTTTCAAGGATTTTTCGTCAACTCAAAATCTTCCTCAACTAACAAATCCTATTCTGATGATAAACAATCCGGTGACGGAGATTCAAGAACTGTTCAGGTGAAGCTAATGCCGGAGTGTGCCGTGGTATCAATTTCCAGAACGCACGAAACATACGCTTTGGTTTTAAAAGTGAAAGCACCACCGCCACTCCGTGGCGGAAGCAGCGGTTTAGATCCTTCACGGCGTGCGCCGATAGATCTTGTTACAGTTCTCGATGTTGGTGGAAGCATGAGCAGTGCAAAGCTTCACATGCTAAAACGCGCGATGCGTTTGGTTATTTCATCTCTTGGTCCAGCTGATAGGCTTTCTATTGTTGCCTTTTCTGCTATTTCCAAACGACTCTTACCGTTAAGAAGAATGACGGCACAAGGTCAACGTTTGGCTCGCCGCATCGTTGACCGTCTCGTTACCGGAGAAGGAAATAACAGCGTTAGTGAAGCTTTGAGAAAAGCAACAAAAGTATTAGAAGATCGGAGAGAAAGAAACCCGGTTGCAAGTGTCATGCTATTATCTGACGGTCAAGATGAAAAGGTTAACAACAGTAACAAACAAAATCAACGGAAGACATGGAGCCACGCGTCATCAACCCGGTTCGCGCATATTGAAATACCGGTTCATGCGTTTGGGTTTGGTAATAAAAGCGGTTACAGTCACGAACCGGGTGAGGATGCGTTTGCAAAATGTGTTGGTGGGCTTTTGAGTGTTGTTGTTCAAGACTTAAGAGTTCAACTGGGCTTTCAATCCGATTCGACCCGGGCCGAAATTAGTGCTATCTATTCATGCAGTGGAAGGCCCACCCTTTTAAGCTTAGGAGCCGTACGGCTCGGCGATTTATACgctgaagaagaaagagaaCTATTGGTGGAGATGAGAGTTCCAGCGTCAGCTTTGGGGAATGGGACCCACCATGTGATGACGGTACGGTGTCTTTATAAAGATCCAGCAAGTCAAGAAATAGTATACGGTAGAGAACAGGGACTTATGGTACAACTACCTCAAAATCAATCTCAGACTGTACGATCATCAACAGGAATGAGGATCGAACGGTTGAGGAATCTTTTTATAACAACACGAGCCATAGCTGAATCAAGGAGGCTTCTAGATCATAATAGTGACTTCACAAGTGCTCATCATTTACTAGCTTCAGCTCGTGCGCTTTTGATTCAATCTGGCTCAGCTTCAGCTGAACAATATGTACGTGGCTTGGAAGGTGAACTTGCAGAGCTTCATTGGAGGAGACAACAAGAACAGGCTCAAGTTGAAGTTCAGCAACACCAATTGATGCAAAGGAGAAGAGGAGGTGAGAATTTGGTGGATGAAAATGGTGAGCCACTTACACCAACTTCGGCTTGGAGAGCTGCTGAGAAGCTGGCTAAGATGGCTATGGTCAAgaaatctttgaataaagttagCGACTTACACGGCTTTGAAAATGCtaggttttaa 2289 0.429 MGTGWRRAFCTRDPESTISDNNNNNGISSPSSSPSPRSCVRLSFLSGGSSNPSTPRLHQSQPVSSPSLRCRTITEAASQITNDSPRFHSKNNTPRATKSPRPNQTSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGMAIYTAECAHAFHFPCIAAHVRNHATLVCPVCNATWKDVPLLAAHKNLAATKSNEITNASDKIQTENPSPVLRTKNLDQSQQQKHSESMRSYDDDEPLISPSGGRINTIPEADENAEEEEDDDNVEFQGFFVNSKSSSTNKSYSDDKQSGDGDSRTVQVKLMPECAVVSISRTHETYALVLKVKAPPPLRGGSSGLDPSRRAPIDLVTVLDVGGSMSSAKLHMLKRAMRLVISSLGPADRLSIVAFSAISKRLLPLRRMTAQGQRLARRIVDRLVTGEGNNSVSEALRKATKVLEDRRERNPVASVMLLSDGQDEKVNNSNKQNQRKTWSHASSTRFAHIEIPVHAFGFGNKSGYSHEPGEDAFAKCVGGLLSVVVQDLRVQLGFQSDSTRAEISAIYSCSGRPTLLSLGAVRLGDLYAEEERELLVEMRVPASALGNGTHHVMTVRCLYKDPASQEIVYGREQGLMVQLPQNQSQTVRSSTGMRIERLRNLFITTRAIAESRRLLDHNSDFTSAHHLLASARALLIQSGSASAEQYVRGLEGELAELHWRRQQEQAQVEVQQHQLMQRRRGGENLVDENGEPLTPTSAWRAAEKLAKMAMVKKSLNKVSDLHGFENARF 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00380 762 Pfam von Willebrand factor type A domain 347 493 IPR002035 -
Tsu07g00380 762 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 762 - -
Tsu07g00380 762 SUPERFAMILY RING/U-box 124 180 - -
Tsu07g00380 762 MobiDBLite consensus disorder prediction 14 115 - -
Tsu07g00380 762 SMART ring_2 130 174 IPR001841 -
Tsu07g00380 762 Gene3D von Willebrand factor, type A domain 347 511 IPR036465 -
Tsu07g00380 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 185 IPR013083 -
Tsu07g00380 762 MobiDBLite consensus disorder prediction 277 297 - -
Tsu07g00380 762 CDD vWA_C3HC4_type 346 518 - -
Tsu07g00380 762 Coils Coil 680 700 - -
Tsu07g00380 762 SMART VWA_4 345 533 IPR002035 -
Tsu07g00380 762 MobiDBLite consensus disorder prediction 1 115 - -
Tsu07g00380 762 CDD RING-H2 130 175 - -
Tsu07g00380 762 Pfam RING-like zinc finger 130 159 IPR001841 -
Tsu07g00380 762 MobiDBLite consensus disorder prediction 201 265 - -
Tsu07g00380 762 SUPERFAMILY vWA-like 345 521 IPR036465 -
Tsu07g00380 762 MobiDBLite consensus disorder prediction 201 228 - -
Tsu07g00380 762 ProSiteProfiles VWFA domain profile. 347 493 IPR002035 -
Tsu07g00380 762 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 762 - -
Tsu07g00380 762 ProSiteProfiles Zinc finger RING-type profile. 130 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00380 Tsu-Chr7 2864323 2867434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00380 122 267 C3H Transcription Factor Family AT3G03550 24.675 8.92e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00380 - - lja:Lj3g3v3131860.1 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00380 07 2864323 2867434 Tsu07g00380 07 2864323 2867434 ECH