Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00378 atggagttctATGATGAGAATTTCATGGAGGAATTAATGGCTCTAAGAAGAGAAACATATGAAATTACAAATCCAAGCCAAGAAGAAAATCAATTCTTCTCATTAACAACTAATAGCTTGAGTTTTGATAATTGTTTTGATCAAAACTCTTTATCTTATCTACCAAACACTTCTTGTAGTCAACAACTTCCTCAAAGTTACAACAACAATGATCACTACAGTAACACTTTCAATGAAATCTATGGCTCTTTACTCGATGAATCTTCGACACCGCAGATTCTCGATTCATACTATAATAGTAACGCGGACGCGCCATTTATTTCTCAAGAAGATTTTCCTTTGTCCATGAtgggagaagaagaagatcaaaGTTTGATTGGTGAAGAGTTTCAGAATTTGGAGCTGCAAACAACATGCAAAATGGAGCCAAGACAATCACCTGAAATGCCTATAGTTTTCAACACTGGTACTAGTTTGGAGAGAAAGAACCGAGTGAAAAAACTTCAAGGACAACCGTCGAAGAATCTAATGGCTGAGAGGAGAAGACGAAAGAGATTAAATGATCGTCTTTCGATGCTACGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACAGCTATACTTGGAGATACTATTGATTACATGAAAGAGCTTCTAGAGAAAATCAACAATCTGCAACAAGAAATTGAACTAGATTCAAATATGACAAGCATTGTCAAAGACGTAAAGCCGAATGAAATCTTAATCAGAAATTCTCCTAAGTTTGAGGTGGAGAGGAGTGCGGATACAAGGGTTGAAATTTGCTGTGCAGGCAAGCCAGGATTGTTGCTATCAACAGTGAACACATTGGAAGCATTAGGTCTTGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACGATGCAAGCTTCTTGTTCAGAGGATTTGGAGAGAAGGACAATGCTGAGCTCTGAAGATATTAAGCAAGCCTTATTCAGAAGTGCAGGGTATGGAGGAAGATGTTTGTGA 1017 0.3638 MEFYDENFMEELMALRRETYEITNPSQEENQFFSLTTNSLSFDNCFDQNSLSYLPNTSCSQQLPQSYNNNDHYSNTFNEIYGSLLDESSTPQILDSYYNSNADAPFISQEDFPLSMMGEEEDQSLIGEEFQNLELQTTCKMEPRQSPEMPIVFNTGTSLERKNRVKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMTSIVKDVKPNEILIRNSPKFEVERSADTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEDLERRTMLSSEDIKQALFRSAGYGGRCL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00378 338 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 338 - -
Tsu07g00378 338 Gene3D - 160 235 IPR036638 GO:0046983
Tsu07g00378 338 Pfam Helix-loop-helix DNA-binding domain 176 219 IPR011598 GO:0046983
Tsu07g00378 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Tsu07g00378 338 SMART finulus 176 225 IPR011598 GO:0046983
Tsu07g00378 338 Coils Coil 209 236 - -
Tsu07g00378 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 232 IPR036638 GO:0046983
Tsu07g00378 338 PANTHER DNA BINDING PROTEIN 3 338 - -
Tsu07g00378 338 CDD ACT_UUR-ACR-like 264 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00378 Tsu-Chr7 2839142 2841766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00378 161 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.385 1.26e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g00378 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00378 - - cam:101489960 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00378 07 2839142 2841766 Tsu07g00378 07 2839142 2841766 ECH