Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00370 ATGAACTTCCATAATCTTTTCATGTTTTTAATGTTTCAATTCATCTTGTTTCTGGGTTGTAGTAGCATTGATTCAGGGATGCGATTGGATATTCAAGAAAAACATGTGATAATGGATAATGGCATAGTACAAGTGAATTTATCAAACCCAGAAGGATATGTCATTGGAATTCAACATAATGGAATTGATAATTTGCTTGAAGTTCTTAATCCAGAATTTGACAGAGGGTATTGGGATATTGTATGGGACCAAGGTGggaaaaatagaacaaaaaaagGTGCAAAGGGAAAGGGTAAACTGGACAGGATGGACACCACAAATTTGACGGTGATTgtagaaaatgaagaacaagtAGAACTATCTTTCACTAGAACATGGAATTTCTCTCTTGAAGGAAAGCTTGCACCACTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCTTCTGGATTTTATACATATGCAATTTATGATCATTTGAAGGAATGGCCTGCATTTGATCTTGACAATACTAGAGTTGCATTCAAACCTAGGAAAGACAAGTTCAATTACATGGTTATAGCCGACGATAGACAAAGATTTATGCCGTTGCCAGAAGACCGGTTACCGGGAAGAGGCCAAGTTCTAGCTTACCCAGAGGCTGTTCGGCTAGTCAATCCGGTAGAACCTGAATTTAAAGGAGAGGTGGATGATAAATATGAGTACTCGTGTGAGAGTCGAAACAACCAAGTTCATGGTTGGATTTCCATTAATTCATCAGAATCCACTGGATTATGGCTAATTACGCCTAGCTATGAGTTTAGATCTGCTGGTCCCTTAAAACAATACCTTGCTTCCCATGCAGGGCCCACCATGCTCTCCGTGTTTCATAGCACACATTATTCAGGGACAGATTTGATAATGAAATTTGGAGTCAATGAGCCGTGGAAGAAAGTCTTTGGGCCTATATTTATATACCTTAATTCAATGTCTGATGGGCTTAGCCCAATTAGCCTCTGGGAGGATGCCAAACAACAGATGGTGAATGAAATTGAAAGCTGGCCCTATACATTTCCTGCTTCTAAGGACTTTCTCTCATCTGCCCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGTGATAGGTACATTAGTGATGCATATGTCCCAGTGAGTGGTGCTTATGTTGGATTAGCACCCCTAGGAGATGTTGGATCTTGGCAAAGAGAATACAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATAATTAACATACGTCCTGGTGACTATAATCTGTATTCGTGGGTCACTGGATTCATTGGTGATTATCAATATAACAATGTCATTAACATAACTTCAGGTTGTGAAATTAATGTTGGTGAGGTTGTTTATGAGCCACCAAGAGATGGTCCAACATTGTGGGAAATAGGCATTCCTGATCGCAAAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCGTTGTACGTGAACAAACTTTATGTCAACCATACAGACAGATATAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGATTACAAAGAGGACTGGTTTTTTGCTCAAGTTACCAGGAAAATAGACAACAACACTTACCAAGGAACTACatggaaaattaattttagtctTGATCATGTGAATACCAATGGAACCTACAAATTGCGACTAGCTCTAGCATCTGTACATTCTGCTGAGTTACTGATTCACATAAACAATTCAAATGCAACAAGTCCACCTTTATTTTCAAGTGGAGTTATTGGAAAGGAGAATACTATAGCAAGACATGGAATTCATGGATTTTACTGGTTATTCAACATTGATGTTGAAGGCACTCTTCTTGTGAAAGGAAACAATACCATCTTCCTAACACAAGCTAGCAACAATGGTCCTTTTGTAGGAATTTTGTATGATTATATTCGATTGGAGGGTCCACctgatattaattttaataaagatCAAAATTAG 2025 0.3728 MNFHNLFMFLMFQFILFLGCSSIDSGMRLDIQEKHVIMDNGIVQVNLSNPEGYVIGIQHNGIDNLLEVLNPEFDRGYWDIVWDQGGKNRTKKGAKGKGKLDRMDTTNLTVIVENEEQVELSFTRTWNFSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKPRKDKFNYMVIADDRQRFMPLPEDRLPGRGQVLAYPEAVRLVNPVEPEFKGEVDDKYEYSCESRNNQVHGWISINSSESTGLWLITPSYEFRSAGPLKQYLASHAGPTMLSVFHSTHYSGTDLIMKFGVNEPWKKVFGPIFIYLNSMSDGLSPISLWEDAKQQMVNEIESWPYTFPASKDFLSSAQRGKVEGRLLVRDRYISDAYVPVSGAYVGLAPLGDVGSWQREYKGYQFWTITDDKGYFSIINIRPGDYNLYSWVTGFIGDYQYNNVINITSGCEINVGEVVYEPPRDGPTLWEIGIPDRKAAEFYVPDPNPLYVNKLYVNHTDRYRQYGLWERYADLYPNEDLVYTVGISDYKEDWFFAQVTRKIDNNTYQGTTWKINFSLDHVNTNGTYKLRLALASVHSAELLIHINNSNATSPPLFSSGVIGKENTIARHGIHGFYWLFNIDVEGTLLVKGNNTIFLTQASNNGPFVGILYDYIRLEGPPDINFNKDQN 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00370 674 Gene3D - 146 316 IPR014718 GO:0030246
Tsu07g00370 674 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 663 - -
Tsu07g00370 674 CDD RGL4_C 474 662 - -
Tsu07g00370 674 SUPERFAMILY Galactose-binding domain-like 469 662 IPR008979 -
Tsu07g00370 674 SUPERFAMILY Starch-binding domain-like 361 459 IPR013784 GO:0030246
Tsu07g00370 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 663 - -
Tsu07g00370 674 Pfam Polysaccharide lyase family 4, domain III 472 661 IPR029411 -
Tsu07g00370 674 Pfam Rhamnogalacturonate lyase family 29 230 IPR010325 -
Tsu07g00370 674 Gene3D - 470 662 - -
Tsu07g00370 674 Pfam Polysaccharide lyase family 4, domain II 386 458 IPR029413 -
Tsu07g00370 674 Gene3D - 360 459 - -
Tsu07g00370 674 CDD RGL4_M 363 460 IPR029413 -
Tsu07g00370 674 CDD RGL4_N 35 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00370 Tsu-Chr7 2774763 2779828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00370 25 664 Polysaccharide Lyase AT1G09890 62.053 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00370 K18195 - gmx:100786488 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00370 07 2774763 2779828 Tsu07g00370 07 2774763 2779828 ECH