Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00369 ATGATTTCTcgATTTCTAGCTCatagaaagaataaaaagaaaggatTTACCATGTCCGCTCCAGGTGTACAGTTACATATCCAACAACACCATGTGGTGATGGATAATGGCATAGTCCAAGTTACATTATCAAATCCAGGTGGAATTGTTACCGGAATCCGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAATAAGGAGACTAATAGAGGGTATTGGGATCTTGTTTGGAGTGCACCAGGAATCAAAGGATATTTTGATGTGATTAGTGGAACATGTTTTGAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCAAGAGAATGTGGGATCATTCTCTCGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTACATGGATGGCCAGATTTTGATATGAGTGAAACGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAGTACATGGCTATGGCAGACGATAGGCGAAGAATTATGCCTTTTCCAGAGGATCGATTACCAGGAAGATGCCAACCCTTGGCCTACCAAGAAGCTGTCCTACTAATCAATCCTAAGAATCCACAATTGAAAGGAGAGGTGGATGACAAGTATCAATATTCATGCAAGAACATAGACAATCGAGTCCATGGGTGGATATCTTTCAATCCACCTGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCTTCAAGCAGAATTTGACCTCACATGTAGGACCCACCACACTTGCCATGTTTCTTTGTGGTCACTATGCCGGACAAGATTTGGTACCCAAAATCAGAGGTGGTGAACCATGGAAGAAAGTTTTTGGTCCTGTATATATTTATCTCAATTCTGGACCAACGGGTGATGACCCACTCTGGTTATGGGAGGATGCAAAAATAAAGATGATGAATGAAGTTCAAAGTTGGCCATATTTATTCCCCGCTTCTGAGGATTTTTTAAAACCAGATCAACGAGGCAACGTCAGTGGCAGATTACTTGTCTTAGACAGgtACATCAGCACTGACTTAATATCAGCAAATGGCGCTTATGTTGGTCTGGCTCCACCGGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGACGTGAATGGATTTTTTACGATTAGAAATGTACGTCCAGGTGACTACAACCTTTTTGCCTGGGTGCCTGGTTTTGTTGGAGACTACAGATTTGGTGATTCTGTGAAGATAACCCCAGGATCTTGCATTGAATTGGGGGAAATTGTATTTGAACCTCCAAGGGATGGCCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCCGCAGAATTTTATGCTCCTGATCCTAATCCACAGTATATAAATAAGGTTCTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGAAAGATATTCAGAGTTATATCCGGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTATAGGAAGGATTGGTTTTACGCTCAGGTTCCCAGAAAAAAAGCGGATAACACTCATGAAGGAACAACTTGGCAAATCAAGTTTGAACTCGGTGGTGTTATTCAAGGAACTGTATATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTCAATGACCCCAATGCAAGGCGTCCCGTATTTACCACTGGATTAATAGGAAGGGAAAACACAATTGCAAGACTAGGAATTCACGGACTCTATTGGCTGTACCATGTGAATATATCAAGTTCTCTTTTTATTGATGGCAcaaatactatatattttacACAGCCAAGATGCACCAGTCCTTTCCAGGGTTTCATCCATTCTTTGATATTTTACTTTCGTTGCAAACTTCTCTTTAATTTGTTCACTGCAAGTATCTGCACCATGCCGCCGCTAGGGGTGCAACTCAGTATTGAAGATCATCATgtggTGTTGGACAATGGCATACTCAAAGTCACTTTATCAAATCCTGAGGGAATTGTCACTGGAATAGAATATAATGGCATTGACAACTTGCTTGAAGTGTTGAATGAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGAATATTTGATGTGATAAAGGGGAGCACTTTCAAAGTTATATTGGAAGATGAGGATCAAGTTGAGATATCCTTCAGCAGGAATTGGGATGCCACCATGGAGGGCAAGATGGTTCCTTTAAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCATCCGGCTTCTACTCGTATGCAATTTATGAACACTTGGAGGACTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAATTCCATTATATGGCAATGGCAGATAATAGACAGAGAAATATGCCTCTTCCAGATGATAGAGTACCACCAAGAGGCCAAGCACTTGCCTATCCAGAAGCAGTTCTACTTGTCAATCCTATAGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTACCAATATTCATGTGATAACAAAGATAGCCAAGTTCATGGATGGATTTGCATGGATCCTGCTGTTGGATTCTGGCTTATTACACCTAGCAATGAATTTCGTTCGGGTGGACCCGTCAAACAAAACTTAACTTCCCACGTAGGACCTACCACGCTTGCTGTTTTTCTCAGTGCTCATTATAGTGGAGAAGATTTAGTGCCTAAGTTCAAAGCTGGTGAGGCATGGAAAAAAGTTTTTGGTCCAGTTTTTATCTATGTCAATTCTCCTTATTATGGTGGTGATCCAATTAAGTTATGGGACGACGCTAAACTTCAGATGTTAATGGAAGTTCAAAGTTGGCCCTACAATTTTCCTGAATCAGATGATTACCTGAAATGGGACGAACGTGGTAACGTTAGTGGCAGACTATTGGTTAAAGAGAGGTATATAGACGATGACGACTATTTATCAGCGAAATGTGCTTATGTTGGCTTGGCTACACCAGGAGATGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGACTCAAGCAGATGATGATGGCTATTTCAACATCAGCAATATACGTGTTGGCGACTATAATGTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGTAATTAGTATAACAGAAGGTTGTGACATAGACATTGGTGATCTTGTTTATGAGCCACCAAGAGATGGTCCAACATTGTGGGAAATAGGCGTCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTTTATGTTAATCATCCTGACAAATTTAGGCAATATGGAATATGGGAGAGATATGCAGAACTATACCCTGACAAAGATTTGGTCTACACAATTGGTGTTAGTGACTACACAAAAGATTGGTTCTTTGCTCAAGTTACTAGGAAGAAAGATGATAATACATATCAAGGAACAACTTGGCAAATCAAGTTTAAGCTTGATAATGTGAACAAAAAAGGTAGCTATAAACTTCGAGTTGCTTTGGCATCAACTACATATTCAGAACTTCaggTACGAGTTAATGATCCCAAAGCAAATCGCCCTTTATTTTCAAGTGGATTGATAGGAAAGGATAATTCAATTGCTAGACATGGAATTCATGGACTTTATTGGCTTTACAATGTGAACATACCTGGTAATTTACTTGTTGAAGGAGATAATAATACCATCTTTTTGACACAATCAAGAGGTAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCACCAACTTCTAGTTTCAATCGGTAG 3915 0.3967 MISRFLAHRKNKKKGFTMSAPGVQLHIQQHHVVMDNGIVQVTLSNPGGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGIKGYFDVISGTCFEVIVQNEDQVELSFKRMWDHSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLHGWPDFDMSETRITFKLRKDKFQYMAMADDRRRIMPFPEDRLPGRCQPLAYQEAVLLINPKNPQLKGEVDDKYQYSCKNIDNRVHGWISFNPPVGFWQITPSDEFRSGGPFKQNLTSHVGPTTLAMFLCGHYAGQDLVPKIRGGEPWKKVFGPVYIYLNSGPTGDDPLWLWEDAKIKMMNEVQSWPYLFPASEDFLKPDQRGNVSGRLLVLDRYISTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADVNGFFTIRNVRPGDYNLFAWVPGFVGDYRFGDSVKITPGSCIELGEIVFEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYINKVLINHPDRFRQYGLWERYSELYPDADLVYTIGVSDYRKDWFYAQVPRKKADNTHEGTTWQIKFELGGVIQGTVYKLRVAIASATLAELQIRVNDPNARRPVFTTGLIGRENTIARLGIHGLYWLYHVNISSSLFIDGTNTIYFTQPRCTSPFQGFIHSLIFYFRCKLLFNLFTASICTMPPLGVQLSIEDHHVVLDNGILKVTLSNPEGIVTGIEYNGIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGIFDVIKGSTFKVILEDEDQVEISFSRNWDATMEGKMVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYVNSPYYGGDPIKLWDDAKLQMLMEVQSWPYNFPESDDYLKWDERGNVSGRLLVKERYIDDDDYLSAKCAYVGLATPGDVGSWQRECKNYQFWTQADDDGYFNISNIRVGDYNVYAWVPGFIGDYKYDVVISITEGCDIDIGDLVYEPPRDGPTLWEIGVPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGIWERYAELYPDKDLVYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKKGSYKLRVALASTTYSELQVRVNDPKANRPLFSSGLIGKDNSIARHGIHGLYWLYNVNIPGNLLVEGDNNTIFLTQSRGNGPFQAIMYDYIRLEGPPTSSFNR 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00369 1304 Gene3D - 22 324 IPR014718 GO:0030246
Tsu07g00369 1304 Gene3D - 666 961 IPR014718 GO:0030246
Tsu07g00369 1304 CDD RGL4_N 669 962 - -
Tsu07g00369 1304 Gene3D - 346 443 - -
Tsu07g00369 1304 Gene3D - 994 1089 - -
Tsu07g00369 1304 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 9 643 - -
Tsu07g00369 1304 Pfam Rhamnogalacturonate lyase family 666 864 IPR010325 -
Tsu07g00369 1304 Pfam Rhamnogalacturonate lyase family 18 217 IPR010325 -
Tsu07g00369 1304 CDD RGL4_M 348 447 IPR029413 -
Tsu07g00369 1304 SUPERFAMILY Galactose mutarotase-like 33 313 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tsu07g00369 1304 SUPERFAMILY Starch-binding domain-like 391 445 IPR013784 GO:0030246
Tsu07g00369 1304 CDD RGL4_C 1107 1295 - -
Tsu07g00369 1304 Pfam Polysaccharide lyase family 4, domain III 1105 1294 IPR029411 -
Tsu07g00369 1304 Pfam Polysaccharide lyase family 4, domain III 457 639 IPR029411 -
Tsu07g00369 1304 SUPERFAMILY Galactose-binding domain-like 454 642 IPR008979 -
Tsu07g00369 1304 CDD RGL4_M 995 1095 IPR029413 -
Tsu07g00369 1304 CDD RGL4_C 459 639 - -
Tsu07g00369 1304 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 657 1300 - -
Tsu07g00369 1304 SUPERFAMILY Galactose-binding domain-like 1102 1295 IPR008979 -
Tsu07g00369 1304 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 9 643 - -
Tsu07g00369 1304 Gene3D - 455 650 - -
Tsu07g00369 1304 Gene3D - 1103 1295 - -
Tsu07g00369 1304 SUPERFAMILY Starch-binding domain-like 1032 1091 IPR013784 GO:0030246
Tsu07g00369 1304 CDD RGL4_N 31 314 - -
Tsu07g00369 1304 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 657 1300 - -
Tsu07g00369 1304 Pfam Polysaccharide lyase family 4, domain II 1019 1091 IPR029413 -
Tsu07g00369 1304 Pfam Polysaccharide lyase family 4, domain II 371 443 IPR029413 -
Tsu07g00369 1304 SUPERFAMILY Galactose mutarotase-like 670 957 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00369 Tsu-Chr7 2758864 2769952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00369 18 643 Polysaccharide Lyase AT1G09890 66.720 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00369 K18195 - gmx:100793563 1217.6