Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00351 ATGCCGCCACTTTCTCCCACACCGACACCGCCAAAAAAGAAACGAAGCCTCGCTGGAATGCCAGATCCAAATGCTGAAGTAATCGCTTTATCACCAAAAACTTTGTTAACGACGAACCGTTTCATATGCGAGATCTGCAACAAAGGATTTCAACGAGAACAGAATCTTCAACTTCACCGGCGAGGACATAACATGCCGTGGAAACTCCGGCAACGAGCGACGGAAGAAATCCGCAAGAAAGTGTACGTATGTCCTGAACCTTCCTGTGTACACCACAATCCATCAAGAGCGCTAGGTGACCTGACCGGCGTGAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAACGTTGTTCTAAAAATTATGCTGTGAAATCTGATTGTAAAGCACATATGAAGAGTTGTGGAAATAGAGAGTATAAATGTGATTGTGGCTCCTTGTTCTCTAGGAGGGATAGTTTCGTTACGCACAAAGCTTTCTGCGATATAGTGTTGGCAAATGAGAGTGGAAGAGGAGGTAGCAATGTTGTAAATGATGGCGGTGTTGTCGGTTCATCTGCACCGCCAACGCCTCCACTTACTCCATCAACACTATCTGTGGCGTCTCCTGCTACTTTGTCGCCTATTCACAACtcagATATTGCAGAAAACCCAACAAAGCTGTCACCTCCATCTTCAAATGCTTCCACTTCTACCAGTTGTTGTTCCTCATTCAGCAGCCTCATGACAAGCTTGGCTCACTCGGATTGCCCCACCACATCTTTCTCTGTCACAGAACCTACAACCCTCTCACTTTTCACACCACTCTATCTCtccaataacaacaacaatgatCAGTACCCTCTTCCTCACTACAGTCCTGCATTATCTGCCACTGCATTACTCCAAAAAGCTGCTCAAATGGGTTCGCGTTCCTCCAATTCATCCTTGCTTCATGCTTTAGGTTTGAAAGAAAGCAGCGTCGGTATTAGCAACACCACAACAGATAAATGGAATGGCCATGGTAATGTAAAACAAGAGAACGAGCTTGTGGCAGATTACCTTGGGCTTGGATTACTTCCCTGTGGAAATGAGATTATGGGCTCACCGGACCAGCCCATGACCCGTGATCTTCTTGGTCTAAGCATGGGATTGGGTAGAGGGGATGATGATCTTTCTGCTTTGCTCACATCTTTTGGAGGAAACTTCGATTCATCTGCATAG 1215 0.4494 MPPLSPTPTPPKKKRSLAGMPDPNAEVIALSPKTLLTTNRFICEICNKGFQREQNLQLHRRGHNMPWKLRQRATEEIRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFSRKHGEKKWKCERCSKNYAVKSDCKAHMKSCGNREYKCDCGSLFSRRDSFVTHKAFCDIVLANESGRGGSNVVNDGGVVGSSAPPTPPLTPSTLSVASPATLSPIHNSDIAENPTKLSPPSSNASTSTSCCSSFSSLMTSLAHSDCPTTSFSVTEPTTLSLFTPLYLSNNNNNDQYPLPHYSPALSATALLQKAAQMGSRSSNSSLLHALGLKESSVGISNTTTDKWNGHGNVKQENELVADYLGLGLLPCGNEIMGSPDQPMTRDLLGLSMGLGRGDDDLSALLTSFGGNFDSSA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00351 404 MobiDBLite consensus disorder prediction 201 232 - -
Tsu07g00351 404 Gene3D Classic Zinc Finger 41 86 - -
Tsu07g00351 404 SUPERFAMILY beta-beta-alpha zinc fingers 40 137 IPR036236 -
Tsu07g00351 404 Pfam Zinc-finger double-stranded RNA-binding 41 63 IPR022755 -
Tsu07g00351 404 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Tsu07g00351 404 Gene3D Classic Zinc Finger 93 171 - -
Tsu07g00351 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 63 IPR013087 -
Tsu07g00351 404 MobiDBLite consensus disorder prediction 181 232 - -
Tsu07g00351 404 MobiDBLite consensus disorder prediction 1 23 - -
Tsu07g00351 404 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 281 401 - -
Tsu07g00351 404 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 260 - -
Tsu07g00351 404 SMART c2h2final6 117 137 IPR013087 -
Tsu07g00351 404 SMART c2h2final6 41 63 IPR013087 -
Tsu07g00351 404 SMART c2h2final6 82 112 IPR013087 -
Tsu07g00351 404 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 281 401 - -
Tsu07g00351 404 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 8 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00351 Tsu-Chr7 2637565 2640510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00351 12 398 IDZ Gene Family AT3G50700 49.752 8.68e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g00351 zf-C2H2_jaz 2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00351 K25869 - gmx:100800089 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00351 07 2637565 2640510 Tsu07g00351 07 2637565 2640510 ECH